Z. japonica Nagirizaki
Zjn_sc04028.1.g00020.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G24540.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 66 5 64 7e-21 333.3 63.6 83.3
Subject 220 3 62
Annot | Symbols: AGL24 | AGAMOUS-like 24 | chr4:12671160-12673645 REVERSE LENGTH=220
NR gb|ACH86229.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 66 1 64 2e-25 348.5 89.4 93.9
Subject 230 1 64
Annot MADS box protein [Saccharum officinarum] gi|223471676|gb|ACM90827.1| MADS box transcription factor [Saccharum arundinaceum]
IRGSP Os03t0186600-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 66 2 65 3e-27 375.8 86.4 90.9
Subject 248 19 82
Annot
Sbicolor Sobic.001G478400.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 66 1 62 1e-28 351.5 89.4 92.4
Subject 232 1 62
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc04028.1.g00020.1.sm.mk length: 66 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 2.7e-24 5-25
25-40
40-61
HMMPfam PF00319 SRF-TF 7.2e-24 12-61
HMMSmart SM00432 no description 7.2e-32 3-62
PatternScan PS00350 MADS_BOX_1 NA 5-59
ProfileScan PS50066 MADS_BOX_2 26.114 3-63
superfamily SSF55455 SRF-like 1.2e-22 4-66
no_ID  
HMMPanther PTHR11945 MADS 2.6e-33 5-65
HMMPanther PTHR11945:SF19 MADS 2.6e-33 5-65
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc04028.1 maker_non_over exon 774 961 . + . ID=Zjn_sc04028.1.g00020.1.sm.mk:exon:1
Zjn_sc04028.1 maker_non_over exon 1185 1197 . + . ID=Zjn_sc04028.1.g00020.1.sm.mk:exon:2

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