Z. japonica Nagirizaki
Zjn_sc02841.1.g00010.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT5G13080.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
78 |
8 |
64 |
2e-22 |
185.9 |
59 |
65.4 |
| Subject |
145 |
87 |
143 |
|
| Annot |
| Symbols: WRKY75, ATWRKY75 | WRKY DNA-binding protein 75 | chr5:4149928-4151019 REVERSE LENGTH=145 |
| NR |
ref|XP_004979296.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
78 |
8 |
74 |
5e-28 |
265.4 |
76.9 |
84.6 |
| Subject |
207 |
137 |
202 |
|
| Annot |
PREDICTED: probable WRKY transcription factor 75 [Setaria italica] |
| IRGSP |
Os11t0490900-01_chr11_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
78 |
8 |
78 |
3e-28 |
310.3 |
75.6 |
82.1 |
| Subject |
242 |
157 |
231 |
|
| Annot |
|
| Sbicolor |
Sobic.005G117400.2.p|Chr05|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
78 |
8 |
74 |
8e-31 |
288.5 |
78.2 |
83.3 |
| Subject |
225 |
154 |
219 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc02841.1.g00010.1.sm.mk |
length: 78 aa. |
| IPR003657 |
DNA-binding WRKY |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| Molecular Function |
GO:0043565 |
sequence-specific DNA binding |
|
|
| Gene3D |
G3DSA:2.20.25.80 |
no description |
2.3e-15 |
7-45 |
| HMMPfam |
PF03106 |
WRKY |
1.2e-15 |
8-45 |
| HMMSmart |
SM00774 |
DNA |
1.3e-10 |
4-46 |
| ProfileScan |
PS50811 |
WRKY |
16.363 |
8-47 |
| superfamily |
SSF118290 |
WRKY |
2.5e-13 |
7-48 |
Pseudomolecule
No data.
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc02841.1 |
maker_non_over |
exon |
271 |
484 |
. |
- |
. |
ID=Zjn_sc02841.1.g00010.1.sm.mk:exon:2 |
| Zjn_sc02841.1 |
maker_non_over |
exon |
1514 |
1536 |
. |
- |
. |
ID=Zjn_sc02841.1.g00010.1.sm.mk:exon:1 |