Z. japonica Nagirizaki
Zjn_sc01886.1.g00010.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G16290.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 241 5 209 4e-83 197.9 61 71.4
Subject 477 44 248
Annot | Symbols: VAT1 | VALINE-TOLERANT 1 | chr5:5333874-5337387 FORWARD LENGTH=477
NR ref|NP_001146158.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 241 4 235 e-100 197.5 75.9 87.1
Subject 476 38 270
Annot uncharacterized protein LOC100279727 [Zea mays] gi|219885997|gb|ACL53373.1| unknown [Zea mays]
IRGSP Os11t0256050-00_chr11_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 241 21 236 e-102 112.9 75.1 82.6
Subject 272 56 272
Annot
Sbicolor Sobic.005G082200.1.p|Chr05|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 241 21 235 9e-97 197.5 69.7 81.3
Subject 476 56 271
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc01886.1.g00010.1.sm.mkhc length: 241 aa.
IPR004789 Acetolactate synthase, small subunit
method AccNumber shortName E-value location
Molecular Function GO:0003984 acetolactate synthase activity    
Biological Process GO:0009082 branched-chain amino acid biosynthetic process    
HMMTigr TIGR00119 acolac_sm: 1.2e-52 36-190
IPR019455 Acetolactate synthase, small subunit, C-terminal
HMMPfam PF10369 ALS_ss_C 6.5e-27 116-190
no_ID  
BlastProDom PD002844 Q53L28_ORYSA_Q53L28; 5e-33 38-109
Gene3D G3DSA:3.30.70.1150 no description 1e-26 116-191
Gene3D G3DSA:3.30.70.260 no description 1.7e-27 36-111
HMMPanther PTHR30239 ACETOLACTATE 5.2e-88 35-235
HMMPanther PTHR30239:SF0 ACETOLACTATE 5.2e-88 35-235
HMMPfam PF13710 ACT_5 6.6e-14 47-106
Seg seg seg NA 10-20
superfamily SSF55021 ACT-like 8.4e-20 111-196
32-115
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc01886.1 maker exon 79 176 . + . ID=Zjn_sc01886.1.g00010.1.sm.mkhc:exon:1
Zjn_sc01886.1 maker exon 636 852 . + . ID=Zjn_sc01886.1.g00010.1.sm.mkhc:exon:2
Zjn_sc01886.1 maker exon 1004 1087 . + . ID=Zjn_sc01886.1.g00010.1.sm.mkhc:exon:3
Zjn_sc01886.1 maker exon 1215 1283 . + . ID=Zjn_sc01886.1.g00010.1.sm.mkhc:exon:4
Zjn_sc01886.1 maker exon 1380 1463 . + . ID=Zjn_sc01886.1.g00010.1.sm.mkhc:exon:5
Zjn_sc01886.1 maker exon 1557 2082 . + . ID=Zjn_sc01886.1.g00010.1.sm.mkhc:exon:6

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