Z. japonica Nagirizaki
Zjn_sc00536.1.g00010.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G57230.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 88 1 88 3e-33 272.7 71.6 86.4
Subject 240 1 88
Annot | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=240
NR ref|XP_012703481.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 88 1 88 3e-36 275 86.4 94.3
Subject 242 1 89
Annot PREDICTED: MADS-box transcription factor 57-like [Setaria italica] gi|835914464|ref|XP_012703484.1| PREDICTED: MADS-box transcription factor 57-like [Setaria italica]
IRGSP Os02t0731200-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 88 1 88 2e-37 273.9 85.2 92
Subject 241 1 88
Annot
Sbicolor Sobic.004G250000.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 88 1 87 8e-42 209.1 89.8 95.5
Subject 184 1 87
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00536.1.g00010.1.sm.mkhc length: 88 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 5.9e-30 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 3.3e-27 10-59
HMMSmart SM00432 no description 8.1e-41 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 32.057 1-61
superfamily SSF55455 SRF-like 6.8e-31 1-84
no_ID  
HMMPanther PTHR11945 MADS 3.9e-50 1-82
HMMPanther PTHR11945:SF19 MADS 3.9e-50 1-82
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00536.1 maker exon 770 1861 . - . ID=Zjn_sc00536.1.g00010.1.sm.mkhc:exon:3
Zjn_sc00536.1 maker exon 3079 3157 . - . ID=Zjn_sc00536.1.g00010.1.sm.mkhc:exon:2
Zjn_sc00536.1 maker exon 3822 4751 . - . ID=Zjn_sc00536.1.g00010.1.sm.mkhc:exon:1

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