Z. japonica Nagirizaki
Zjn_sc00351.1.g00040.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G30080.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 627 17 626 e-128 106.9 47.5 58.7
Subject 670 7 647
Annot | Symbols: ARF16 | auxin response factor 16 | chr4:14703369-14705564 REVERSE LENGTH=670
NR ref|XP_004953169.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 627 8 626 0.0 111 66.3 74.2
Subject 696 1 673
Annot PREDICTED: auxin response factor 8-like [Setaria italica]
IRGSP Os02t0628600-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 627 8 626 0.0 108.6 65.2 73.2
Subject 681 1 658
Annot
Sbicolor Sobic.004G221400.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 627 8 626 0.0 112.9 67.6 74.5
Subject 708 1 685
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00351.1.g00040.1.sm.mk length: 627 aa.
IPR003340 B3 DNA binding domain
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMPfam PF02362 B3 2.5e-12 128-228
HMMSmart SM01019 B3 5.6e-11 128-229
ProfileScan PS50863 B3 9.996 127-229
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 8e-29 250-333
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 14.704 564-627
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 1.5e-24 122-230
superfamily SSF101936 DNA-binding 3.4e-20 122-229
no_ID  
HMMPanther PTHR31384 FAMILY 6.7e-139 1-430
Seg seg seg NA 448-464
497-514
549-564
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00351.1 maker_non_over exon 9113 10111 . + . ID=Zjn_sc00351.1.g00040.1.sm.mk:exon:1
Zjn_sc00351.1 maker_non_over exon 10197 11081 . + . ID=Zjn_sc00351.1.g00040.1.sm.mk:exon:2

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