Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00227.1.g00020.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00227.1)

BLAST

TAIR10	AT2G01290.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	332	67	330	7e-72	79.8	44.9	56.9
		Subject	265	5	264
		Annot	\| Symbols: RPI2 \| ribose-5-phosphate isomerase 2 \| chr2:149192-149989 REVERSE LENGTH=265
NR	gb\|ACN34846.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	332	79	330	e-117	174.7	65.4	69.3
		Subject	580	1	257
		Annot	unknown [Zea mays] gi\|414868543\|tpg\|DAA47100.1\| TPA: ribose-5-phosphate isomerase [Zea mays]
IRGSP	Os04t0306400-01_chr04_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	332	89	330	e-110	82.8	59.6	66.3
		Subject	275	29	273
		Annot
Sbicolor	Sobic.005G033000.1.p\|Chr05\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	332	79	330	e-115	78.3	65.4	69
		Subject	260	1	258
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR004788	Ribose 5-phosphate isomerase, type A
Zjn_sc00227.1.g00020.1.am.mk				length: 332 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004751	ribose-5-phosphate isomerase activity
Biological Process	GO:0009052	pentose-phosphate shunt, non-oxidative branch
HMMPanther	PTHR11934	RIBOSE-5-PHOSPHATE	1.2e-106	58-330
HMMPfam	PF06026	Rib_5-P_isom_A	4e-54	143-324
HMMTigr	TIGR00021	rpiA:	5.4e-67	97-324
IPR020672	Ribose-5-phosphate isomerase, type A, subgroup
Molecular Function	GO:0004751	ribose-5-phosphate isomerase activity
Biological Process	GO:0009052	pentose-phosphate shunt, non-oxidative branch
HAMAP	MF_00170	Rib_5P_isom_A	29.666	94-327
no_ID
Gene3D	G3DSA:3.30.70.260	no description	1.2e-22	233-307
Gene3D	G3DSA:3.40.50.1360	no description	7.2e-49	96-232
HMMPanther	PTHR11934:SF0	SUBFAMILY	1.2e-106	58-330
Seg	seg	seg	NA	25-42 66-89
superfamily	SSF100950	NagB/RpiA/CoA	2e-40	93-243
superfamily	SSF75445	D-ribose-5-phosphate	9.9e-16	223-307

Pseudomolecule

No data.

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00227.1	maker_non_over	exon	8152	9150	.	+	.	ID=Zjn_sc00227.1.g00020.1.am.mk:exon:1