Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00192.1.g00240.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00192.1)

BLAST

TAIR10	AT3G57650.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	241	8	114	3e-42	161.4	35.7	39.8
		Subject	389	7	151
		Annot	\| Symbols: LPAT2 \| lysophosphatidyl acyltransferase 2 \| chr3:21349751-21352839 FORWARD LENGTH=389
NR	ref\|NP_001105919.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	241	115	241	1e-60	155.2	46.9	50.6
		Subject	374	248	374
		Annot	1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 [Zea mays] gi\|83287834\|sp\|Q41745.1\|LPAT_MAIZE RecName: Full=1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1; AltName: Full=Phospholipid synthesis protein 1 gi\|575960\|emb\|CAA82638.1\| 1-acyl-glycerol-3-phosphate acyltransferase (putative) [Zea mays] gi\|195635581\|gb\|ACG37259.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 [Zea mays] gi\|195642000\|gb\|ACG40468.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 [Zea mays] gi\|238014724\|gb\|ACR38397.1\| unknown [Zea mays] gi\|414591756\|tpg\|DAA42327.1\| TPA: 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 [Zea mays]
IRGSP	Os11t0637800-01_chr11_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	241	115	241	3e-60	155.2	44.8	49
		Subject	374	248	374
		Annot
Sbicolor	Sobic.005G197100.1.p\|Chr05\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	241	115	241	6e-62	155.2	46.5	50.2
		Subject	374	248	374
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

no_ID
Zjn_sc00192.1.g00240.1.sm.mkhc				length: 241 aa.
method	AccNumber	shortName	E-value	location
HMMPanther	PTHR10983	1-ACYLGLYCEROL-3-PHOSPHATE	5.6e-54	1-241
HMMPanther	PTHR10983:SF1	1-ACYLGLYCEROL-3-PHOSPHATE	5.6e-54	1-241
Seg	seg	seg	NA	4-23 52-64

Pseudomolecule

Chromosome	Start	End	Strand
9	7517826	7522998	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00192.1	maker	exon	121588	122140	.	-	.	ID=Zjn_sc00192.1.g00240.1.sm.mkhc:exon:7
Zjn_sc00192.1	maker	exon	123006	123089	.	-	.	ID=Zjn_sc00192.1.g00240.1.sm.mkhc:exon:6
Zjn_sc00192.1	maker	exon	123198	123290	.	-	.	ID=Zjn_sc00192.1.g00240.1.sm.mkhc:exon:5
Zjn_sc00192.1	maker	exon	124535	124612	.	-	.	ID=Zjn_sc00192.1.g00240.1.sm.mkhc:exon:4
Zjn_sc00192.1	maker	exon	125387	125446	.	-	.	ID=Zjn_sc00192.1.g00240.1.sm.mkhc:exon:3
Zjn_sc00192.1	maker	exon	126144	126266	.	-	.	ID=Zjn_sc00192.1.g00240.1.sm.mkhc:exon:2
Zjn_sc00192.1	maker	exon	126567	126760	.	-	.	ID=Zjn_sc00192.1.g00240.1.sm.mkhc:exon:1