Z. japonica Nagirizaki
Zjn_sc00184.1.g00310.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G54850.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 789 8 579 0.0 80.1 42.7 53.7
Subject 632 22 601
Annot | Symbols: ATPUB14, PUB14 | plant U-box 14 | chr3:20321524-20323848 FORWARD LENGTH=632
NR ref|XP_004964257.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 789 1 594 0.0 76 65.3 68.7
Subject 600 1 597
Annot PREDICTED: U-box domain-containing protein 12 [Setaria italica]
IRGSP Os06t0102700-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 789 1 579 0.0 76.6 61.7 65.7
Subject 604 1 579
Annot
Sbicolor Sobic.010G000900.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 789 1 594 0.0 76.2 64.6 68.1
Subject 601 1 598
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00184.1.g00310.1.sm.mkhc length: 789 aa.
IPR000225 Armadillo
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00514 Arm 7.9e-08 355-393
437-475
HMMSmart SM00185 Armadillo/beta-catenin-like 23 354-394
395-435
436-476
477-517
518-558
ProfileScan PS50176 ARM_REPEAT 12.967 365-407
IPR003613 U box domain
Cellular Component GO:0000151 ubiquitin ligase complex    
Molecular Function GO:0004842 ubiquitin-protein ligase activity    
Biological Process GO:0016567 protein ubiquitination    
HMMPfam PF04564 U-box 4.2e-24 228-298
HMMSmart SM00504 Modified 1.2e-36 231-294
IPR011989 Armadillo-like helical
Gene3D G3DSA:1.25.10.10 no description 1e-65 279-581
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 2.2e-17 229-278
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 5.1e-46 311-579
no_ID  
HMMPanther PTHR23315 BETA 2.1e-173 8-579
HMMPanther PTHR23315:SF7 ANKYRIN-REPEAT-ARM 2.1e-173 8-579
Seg seg seg NA 26-37
46-64
566-580
681-695
704-719
superfamily SSF57850 RING/U-box 4.2e-30 210-307
Pseudomolecule
Chromosome Start End Strand
197541480736+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00184.1 maker exon 138609 138628 . - . ID=Zjn_sc00184.1.g00310.1.sm.mkhc:exon:7
Zjn_sc00184.1 maker exon 138750 139116 . - . ID=Zjn_sc00184.1.g00310.1.sm.mkhc:exon:6
Zjn_sc00184.1 maker exon 139223 139469 . - . ID=Zjn_sc00184.1.g00310.1.sm.mkhc:exon:5
Zjn_sc00184.1 maker exon 141954 142936 . - . ID=Zjn_sc00184.1.g00310.1.sm.mkhc:exon:4
Zjn_sc00184.1 maker exon 143016 143432 . - . ID=Zjn_sc00184.1.g00310.1.sm.mkhc:exon:3
Zjn_sc00184.1 maker exon 143500 143616 . - . ID=Zjn_sc00184.1.g00310.1.sm.mkhc:exon:2
Zjn_sc00184.1 maker exon 143713 143931 . - . ID=Zjn_sc00184.1.g00310.1.sm.mkhc:exon:1

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