Z. japonica Nagirizaki
Zjn_sc00184.1.g00010.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G62980.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 384 55 301 5e-63 66.9 32.6 43.2
Subject 257 11 245
Annot | Symbols: ATEXPA18, EXP18, ATEXP18, ATHEXP ALPHA 1.25, EXPA18 | expansin A18 | chr1:23331728-23332934 FORWARD LENGTH=257
NR sp|Q4PR49.2|EXP17_ORYSJ Length Start End E-value Length(%) Iden(%) Posi(%)
Query 384 67 296 5e-99 74 44.8 50.8
Subject 284 34 267
Annot RecName: Full=Expansin-A17; AltName: Full=Alpha-expansin-17; AltName: Full=OsEXP17; AltName: Full=OsEXPA17; AltName: Full=OsaEXPa1.31; Flags: Precursor gi|6069656|dbj|BAA85432.1| putative expansin [Oryza sativa Japonica Group] gi|125553749|gb|EAY99354.1| hypothetical protein OsI_21324 [Oryza sativa Indica Group] gi|125605485|gb|EAZ44521.1| hypothetical protein OsJ_29140 [Oryza sativa Japonica Group]
IRGSP Os06t0108600-00_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 384 67 296 e-102 69.8 44.8 50.8
Subject 268 29 262
Annot
Sbicolor Sobic.010G006200.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 384 77 298 2e-98 71.9 44.3 49
Subject 276 38 261
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00184.1.g00010.1.am.mk length: 384 aa.
IPR002963 Expansin
method AccNumber shortName E-value location
Biological Process GO:0009664 plant-type cell wall organization    
FPrintScan PR01226 EXPANSIN 1.4e-34 114-128
140-151
154-164
173-190
190-203
214-226
226-247
IPR007112 Expansin/pollen allergen, DPBB domain
HMMSmart SM00837 Rare 4.1e-46 119-205
ProfileScan PS50842 EXPANSIN_EG45 28.094 101-215
IPR007117 Expansin, cellulose-binding-like domain
Gene3D G3DSA:2.60.40.760 no description 8.3e-14 210-299
HMMPfam PF01357 Pollen_allerg_1 1.9e-13 221-297
ProfileScan PS50843 EXPANSIN_CBD 12.487 225-299
superfamily SSF49590 PHL 9e-16 212-304
IPR007118 Expansin/Lol pI
Cellular Component GO:0005576 extracellular region    
FPrintScan PR01225 EXPANSNFAMLY 1.7e-22 81-96
100-118
123-141
198-214
253-267
IPR009009 RlpA-like double-psi beta-barrel domain
HMMPfam PF03330 DPBB_1 9.4e-21 119-205
superfamily SSF50685 Barwin-like 1.3e-36 66-215
IPR014733 Barwin-like endoglucanase
Gene3D G3DSA:2.40.40.10 no description 1.6e-42 76-209
no_ID  
HMMPanther PTHR31867 FAMILY 5.7e-92 47-305
HMMPanther PTHR31867:SF0 SUBFAMILY 5.7e-92 47-305
Seg seg seg NA 50-64
113-128
325-345
364-377
Pseudomolecule
Chromosome Start End Strand
19211891218691-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00184.1 maker_non_over exon 654 1273 . + . ID=Zjn_sc00184.1.g00010.1.am.mk:exon:1
Zjn_sc00184.1 maker_non_over exon 1370 1642 . + . ID=Zjn_sc00184.1.g00010.1.am.mk:exon:2
Zjn_sc00184.1 maker_non_over exon 7193 7454 . + . ID=Zjn_sc00184.1.g00010.1.am.mk:exon:3

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