Z. japonica Nagirizaki
Zjn_sc00177.1.g00040.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G17120.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 21 211 5e-39 147.1 34.5 49.6
Subject 350 110 310
Annot | Symbols: LYM2 | lysm domain GPI-anchored protein 2 precursor | chr2:7459156-7460648 FORWARD LENGTH=350
NR ref|XP_004957557.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 12 223 2e-97 158 72.7 80.7
Subject 376 112 332
Annot PREDICTED: chitin elicitor-binding protein [Setaria italica]
IRGSP Os09t0548200-01_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 12 224 2e-97 156.7 71 81.5
Subject 373 106 329
Annot
Sbicolor Sobic.002G286700.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 12 223 3e-92 156.7 72.3 81.5
Subject 373 109 329
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00177.1.g00040.1.sm.mk length: 238 aa.
IPR018392 Peptidoglycan-binding lysin domain
method AccNumber shortName E-value location
Biological Process GO:0016998 cell wall macromolecule catabolic process    
HMMPfam PF01476 LysM 5.5e-07 21-67
85-128
HMMSmart SM00257 Lysin 2.6e-07 20-67
84-128
no_ID  
Gene3D G3DSA:3.10.350.10 no description 5.3e-08 20-68
84-128
Seg seg seg NA 10-16
188-197
superfamily SSF54106 LysM 6.6e-07 82-130
18-69
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00177.1 maker_non_over exon 37850 38084 . - . ID=Zjn_sc00177.1.g00040.1.sm.mk:exon:4
Zjn_sc00177.1 maker_non_over exon 38198 38288 . - . ID=Zjn_sc00177.1.g00040.1.sm.mk:exon:3
Zjn_sc00177.1 maker_non_over exon 39825 40164 . - . ID=Zjn_sc00177.1.g00040.1.sm.mk:exon:2
Zjn_sc00177.1 maker_non_over exon 41138 41188 . - . ID=Zjn_sc00177.1.g00040.1.sm.mk:exon:1

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