Z. japonica Nagirizaki
Zjn_sc00173.1.g00150.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G16440.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 613 2 444 e-133 138.2 42.3 52.7
Subject 847 5 470
Annot | Symbols: MCM4 | Minichromosome maintenance (MCM2/3/5) family protein | chr2:7126536-7130665 REVERSE LENGTH=847
NR dbj|BAJ89113.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 613 1 443 0.0 138 61.7 66.6
Subject 846 1 471
Annot predicted protein [Hordeum vulgare subsp. vulgare]
IRGSP Os01t0544450-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 613 15 443 0.0 140.6 62 66.1
Subject 862 23 487
Annot
Sbicolor Sobic.003G183700.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 613 15 443 0.0 139 61.8 65.1
Subject 852 17 477
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00173.1.g00150.1.sm.mk length: 613 aa.
IPR001208 Mini-chromosome maintenance, DNA-dependent ATPase
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006260 DNA replication    
HMMPfam PF00493 MCM 4.4e-07 435-467
473-514
HMMSmart SM00350 minichromosome 7.6e-25 236-535
ProfileScan PS50051 MCM_2 18.268 435-476
IPR008047 Mini-chromosome maintenance complex protein 4
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003678 DNA helicase activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006270 DNA replication initiation    
Cellular Component GO:0042555 MCM complex    
FPrintScan PR01660 MCMPROTEIN4 1.3e-05 262-275
425-436
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 7.3e-31 240-365
superfamily SSF50249 Nucleic 8.3e-55 136-361
IPR018525 Mini-chromosome maintenance, conserved site
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006260 DNA replication    
PatternScan PS00847 MCM_1 NA 447-455
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 8.5e-06 383-540
IPR027925 MCM N-terminal domain
HMMPfam PF14551 MCM_N 2.5e-17 137-256
no_ID  
Gene3D G3DSA:3.30.1640.10 no description 2.9e-07 130-234
Gene3D G3DSA:3.40.50.300 no description 2.5e-06 434-468
HMMPanther PTHR11630 DNA 1.4e-140 5-589
HMMPanther PTHR11630:SF45 DNA 1.4e-140 5-589
Seg seg seg NA 3-23
27-58
85-116
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00173.1 maker_non_over exon 134476 134550 . - . ID=Zjn_sc00173.1.g00150.1.sm.mk:exon:12
Zjn_sc00173.1 maker_non_over exon 134782 134918 . - . ID=Zjn_sc00173.1.g00150.1.sm.mk:exon:11
Zjn_sc00173.1 maker_non_over exon 135016 135082 . - . ID=Zjn_sc00173.1.g00150.1.sm.mk:exon:10
Zjn_sc00173.1 maker_non_over exon 135354 135515 . - . ID=Zjn_sc00173.1.g00150.1.sm.mk:exon:9
Zjn_sc00173.1 maker_non_over exon 136037 136135 . - . ID=Zjn_sc00173.1.g00150.1.sm.mk:exon:8
Zjn_sc00173.1 maker_non_over exon 136502 136615 . - . ID=Zjn_sc00173.1.g00150.1.sm.mk:exon:7
Zjn_sc00173.1 maker_non_over exon 136726 136848 . - . ID=Zjn_sc00173.1.g00150.1.sm.mk:exon:6
Zjn_sc00173.1 maker_non_over exon 136957 137028 . - . ID=Zjn_sc00173.1.g00150.1.sm.mk:exon:5
Zjn_sc00173.1 maker_non_over exon 137123 137247 . - . ID=Zjn_sc00173.1.g00150.1.sm.mk:exon:4
Zjn_sc00173.1 maker_non_over exon 138457 138585 . - . ID=Zjn_sc00173.1.g00150.1.sm.mk:exon:3
Zjn_sc00173.1 maker_non_over exon 138667 139371 . - . ID=Zjn_sc00173.1.g00150.1.sm.mk:exon:2
Zjn_sc00173.1 maker_non_over exon 139468 139501 . - . ID=Zjn_sc00173.1.g00150.1.sm.mk:exon:1

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