Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00167.1.g00430.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00167.1)

BLAST

TAIR10	AT3G43790.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	406	10	398	e-117	117.7	55.9	71.2
		Subject	478	6	475
		Annot	\| Symbols: ZIFL2 \| zinc induced facilitator-like 2 \| chr3:15655443-15658848 FORWARD LENGTH=478
NR	ref\|XP_004977467.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	406	9	406	0.0	121.4	88.2	93.1
		Subject	493	5	493
		Annot	PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like isoform X1 [Setaria italica]
IRGSP	Os12t0133100-02_chr12_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	406	10	406	e-179	123.6	82	89.2
		Subject	502	10	502
		Annot
Sbicolor	Sobic.005G024800.1.p\|Chr05\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	406	23	404	0.0	128.6	82.8	88.7
		Subject	522	53	520
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR011701	Major facilitator superfamily
Zjn_sc00167.1.g00430.1.sm.mkhc				length: 406 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0016021	integral to membrane
Biological Process	GO:0055085	transmembrane transport
HMMPfam	PF07690	MFS_1	3e-10	115-319
IPR016196	Major facilitator superfamily domain, general substrate transporter
superfamily	SSF103473	MFS	1.1e-25	30-396
no_ID
Gene3D	G3DSA:1.20.1250.20	no description	7e-09	43-115 116-205
HMMPanther	PTHR24003	MAJOR	1.1e-67	16-396
HMMPanther	PTHR24003:SF69	SUBFAMILY	1.1e-67	16-396
Seg	seg	seg	NA	3-28 138-155 379-391

Pseudomolecule

No data.

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00167.1	maker	exon	277286	277857	.	-	.	ID=Zjn_sc00167.1.g00430.1.sm.mkhc:exon:15
Zjn_sc00167.1	maker	exon	277954	277997	.	-	.	ID=Zjn_sc00167.1.g00430.1.sm.mkhc:exon:14
Zjn_sc00167.1	maker	exon	278337	278419	.	-	.	ID=Zjn_sc00167.1.g00430.1.sm.mkhc:exon:13
Zjn_sc00167.1	maker	exon	278523	278567	.	-	.	ID=Zjn_sc00167.1.g00430.1.sm.mkhc:exon:12
Zjn_sc00167.1	maker	exon	278890	278976	.	-	.	ID=Zjn_sc00167.1.g00430.1.sm.mkhc:exon:11
Zjn_sc00167.1	maker	exon	279539	279610	.	-	.	ID=Zjn_sc00167.1.g00430.1.sm.mkhc:exon:10
Zjn_sc00167.1	maker	exon	279964	280164	.	-	.	ID=Zjn_sc00167.1.g00430.1.sm.mkhc:exon:9
Zjn_sc00167.1	maker	exon	280268	280343	.	-	.	ID=Zjn_sc00167.1.g00430.1.sm.mkhc:exon:8
Zjn_sc00167.1	maker	exon	280424	280473	.	-	.	ID=Zjn_sc00167.1.g00430.1.sm.mkhc:exon:7
Zjn_sc00167.1	maker	exon	280547	280609	.	-	.	ID=Zjn_sc00167.1.g00430.1.sm.mkhc:exon:6
Zjn_sc00167.1	maker	exon	280692	280745	.	-	.	ID=Zjn_sc00167.1.g00430.1.sm.mkhc:exon:5
Zjn_sc00167.1	maker	exon	281077	281153	.	-	.	ID=Zjn_sc00167.1.g00430.1.sm.mkhc:exon:4
Zjn_sc00167.1	maker	exon	281246	281306	.	-	.	ID=Zjn_sc00167.1.g00430.1.sm.mkhc:exon:3
Zjn_sc00167.1	maker	exon	281486	281526	.	-	.	ID=Zjn_sc00167.1.g00430.1.sm.mkhc:exon:2
Zjn_sc00167.1	maker	exon	282990	283425	.	-	.	ID=Zjn_sc00167.1.g00430.1.sm.mkhc:exon:1