Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00165.1.g00110.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00165.1)

BLAST

TAIR10	AT5G17310.2		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	398	1	398	e-173	118.1	80.4	88.9
		Subject	470	1	470
		Annot	\| Symbols: UGP2 \| UDP-glucose pyrophosphorylase 2 \| chr5:5696955-5700845 REVERSE LENGTH=470
NR	ref\|NP_001130368.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	398	3	398	0.0	118.8	93.7	96
		Subject	473	2	473
		Annot	uncharacterized protein LOC100191463 [Zea mays] gi\|195620532\|gb\|ACG32096.1\| UTP--glucose-1-phosphate uridylyltransferase [Zea mays]
IRGSP	Os09t0553200-01_chr09_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	398	6	398	0.0	117.8	91.5	94
		Subject	469	2	469
		Annot
Sbicolor	Sobic.002G291200.1.p\|Chr02\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	398	7	398	0.0	119.6	93	95.7
		Subject	476	9	476
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR002618	UTP--glucose-1-phosphate uridylyltransferase
Zjn_sc00165.1.g00110.1.sm.mkhc				length: 398 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0008152	metabolic process
Molecular Function	GO:0016779	nucleotidyltransferase activity
HMMPanther	PTHR11952	UDP-	2.7e-180	1-398
HMMPfam	PF01704	UDPGP	1.2e-20	30-279 297-366
IPR016267	UTP--glucose-1-phosphate uridylyltransferase, subgroup
HMMPanther	PTHR11952:SF1	UTP-GLUCOSE-1-PHOSPHATE	2.7e-180	1-398
no_ID
Coil	coil	coiled-coil	NA	6-27
Gene3D	G3DSA:3.90.550.10	no description	5.2e-70	23-279
Seg	seg	seg	NA	78-97
superfamily	SSF53448	Nucleotide-diphospho-sugar	2.4e-62	14-396

Pseudomolecule

No data.

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00165.1	maker	exon	64047	64424	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:18
Zjn_sc00165.1	maker	exon	64512	64583	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:17
Zjn_sc00165.1	maker	exon	64725	64829	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:16
Zjn_sc00165.1	maker	exon	64983	65081	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:15
Zjn_sc00165.1	maker	exon	65367	65423	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:14
Zjn_sc00165.1	maker	exon	65840	65857	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:13
Zjn_sc00165.1	maker	exon	66056	66121	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:12
Zjn_sc00165.1	maker	exon	66195	66241	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:11
Zjn_sc00165.1	maker	exon	66341	66398	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:10
Zjn_sc00165.1	maker	exon	66786	66858	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:9
Zjn_sc00165.1	maker	exon	66963	67036	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:8
Zjn_sc00165.1	maker	exon	67147	67197	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:7
Zjn_sc00165.1	maker	exon	67271	67348	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:6
Zjn_sc00165.1	maker	exon	67422	67482	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:5
Zjn_sc00165.1	maker	exon	68576	68666	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:4
Zjn_sc00165.1	maker	exon	68786	68877	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:3
Zjn_sc00165.1	maker	exon	68971	69018	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:2
Zjn_sc00165.1	maker	exon	69119	69265	.	-	.	ID=Zjn_sc00165.1.g00110.1.sm.mkhc:exon:1