Z. japonica Nagirizaki
Zjn_sc00164.1.g00090.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
No_hits |
| NR |
ref|XP_004955929.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
351 |
99 |
348 |
3e-76 |
111.1 |
41 |
53.3 |
| Subject |
390 |
23 |
283 |
|
| Annot |
PREDICTED: uncharacterized protein LOC101779925 [Setaria italica] |
| IRGSP |
Os07t0242600-01_chr07_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
351 |
99 |
332 |
4e-61 |
113.1 |
36.5 |
46.2 |
| Subject |
397 |
28 |
271 |
|
| Annot |
|
| Sbicolor |
Sobic.002G098700.1.p|Chr02|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
351 |
86 |
335 |
4e-77 |
80.3 |
39.9 |
50.7 |
| Subject |
282 |
16 |
270 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00164.1.g00090.1.sm.mk |
length: 351 aa. |
| IPR001810 |
F-box domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| superfamily |
SSF81383 |
F-box |
8.7e-10 |
83-196 |
| IPR017451 |
F-box associated interaction domain |
| HMMTigr |
TIGR01640 |
F_box_assoc_1: |
4.8e-13 |
185-324 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
2.5e-06 |
95-132 |
| HMMPfam |
PF12937 |
F-box-like |
6.2e-06 |
101-137 |
| Seg |
seg |
seg |
NA |
25-43 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 3 | 202929 | 204446 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00164.1 |
maker_non_over |
exon |
112619 |
113447 |
. |
- |
. |
ID=Zjn_sc00164.1.g00090.1.sm.mk:exon:3 |
| Zjn_sc00164.1 |
maker_non_over |
exon |
113576 |
113676 |
. |
- |
. |
ID=Zjn_sc00164.1.g00090.1.sm.mk:exon:2 |
| Zjn_sc00164.1 |
maker_non_over |
exon |
114011 |
114136 |
. |
- |
. |
ID=Zjn_sc00164.1.g00090.1.sm.mk:exon:1 |