Z. japonica Nagirizaki
Zjn_sc00162.1.g00420.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G60910.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 81 1 61 6e-27 298.8 66.7 72.8
Subject 242 1 61
Annot | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502736-24506013 REVERSE LENGTH=242
NR ref|NP_001105333.2| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 81 1 62 4e-27 328.4 74.1 75.3
Subject 266 1 62
Annot zea apetala homolog1 [Zea mays] gi|414592108|tpg|DAA42679.1| TPA: zea apetala-like protein [Zea mays]
IRGSP Os07t0108900-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 81 1 62 6e-31 119.8 75.3 76.5
Subject 97 1 62
Annot
Sbicolor Sobic.002G010100.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 81 1 62 4e-30 333.3 74.1 75.3
Subject 270 1 62
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00162.1.g00420.1.am.mk length: 81 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 1.4e-32 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 1e-29 9-59
HMMSmart SM00432 no description 2.9e-42 1-60
ProfileScan PS50066 MADS_BOX_2 32.772 1-61
superfamily SSF55455 SRF-like 1.2e-28 2-64
no_ID  
HMMPanther PTHR11945 MADS 8.7e-45 1-61
HMMPanther PTHR11945:SF19 MADS 8.7e-45 1-61
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00162.1 maker_non_over exon 190299 190483 . + . ID=Zjn_sc00162.1.g00420.1.am.mk:exon:1
Zjn_sc00162.1 maker_non_over exon 190657 190717 . + . ID=Zjn_sc00162.1.g00420.1.am.mk:exon:2

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