Z. japonica Nagirizaki
Zjn_sc00161.1.g00100.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G57230.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 67 1 59 6e-20 358.2 64.2 77.6
Subject 240 1 59
Annot | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=240
NR gb|EMT10914.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 67 1 59 1e-19 407.5 64.2 83.6
Subject 273 32 90
Annot MADS-box transcription factor 27 [Aegilops tauschii]
IRGSP Os06t0347700-00_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 67 1 60 4e-23 219.4 65.7 85.1
Subject 147 1 60
Annot
Sbicolor Sobic.007G135300.2.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 67 1 59 2e-20 135.8 61.2 82.1
Subject 91 1 59
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00161.1.g00100.1.am.mkhc length: 67 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 3.5e-25 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 4e-24 9-59
HMMSmart SM00432 no description 6.3e-32 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 27.824 1-61
superfamily SSF55455 SRF-like 5.1e-22 2-59
no_ID  
HMMPanther PTHR11945 MADS 3.2e-31 1-59
HMMPanther PTHR11945:SF19 MADS 3.2e-31 1-59
Pseudomolecule
Chromosome Start End Strand
1941342244140211+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00161.1 maker exon 64827 65424 . - . ID=Zjn_sc00161.1.g00100.1.am.mkhc:exon:3
Zjn_sc00161.1 maker exon 65515 65655 . - . ID=Zjn_sc00161.1.g00100.1.am.mkhc:exon:2
Zjn_sc00161.1 maker exon 70595 70814 . - . ID=Zjn_sc00161.1.g00100.1.am.mkhc:exon:1

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