Z. japonica Nagirizaki
Zjn_sc00155.1.g00270.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G45660.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 241 35 165 4e-40 88.8 33.6 44.4
Subject 214 3 130
Annot | Symbols: AGL20, SOC1, ATSOC1 | AGAMOUS-like 20 | chr2:18807799-18810193 REVERSE LENGTH=214
NR ref|XP_002451346.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 241 23 194 8e-47 121.2 48.1 54.8
Subject 292 28 227
Annot hypothetical protein SORBIDRAFT_04g000500 [Sorghum bicolor] gi|241931177|gb|EES04322.1| hypothetical protein SORBIDRAFT_04g000500 [Sorghum bicolor]
IRGSP Os02t0104100-00_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 241 20 177 3e-45 112 46.9 54.8
Subject 270 25 212
Annot
Sbicolor Sobic.004G003400.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 241 23 194 1e-49 121.2 48.1 54.8
Subject 292 28 227
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00155.1.g00270.1.sm.mkhc length: 241 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 6.5e-28 35-55
55-70
70-91
HMMPfam PF00319 SRF-TF 9.9e-25 42-91
HMMSmart SM00432 no description 7.7e-35 33-92
PatternScan PS00350 MADS_BOX_1 NA 35-89
ProfileScan PS50066 MADS_BOX_2 28.875 33-93
superfamily SSF55455 SRF-like 3.1e-28 34-127
IPR002487 Transcription factor, K-box
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 1.4e-05 122-165
no_ID  
Coil coil coiled-coil NA 121-142
HMMPanther PTHR11945 MADS 3.1e-50 20-196
HMMPanther PTHR11945:SF19 MADS 3.1e-50 20-196
Seg seg seg NA 3-12
28-42
181-192
Pseudomolecule
Chromosome Start End Strand
8110109115164+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00155.1 maker exon 110109 110389 . + . ID=Zjn_sc00155.1.g00270.1.sm.mkhc:exon:1
Zjn_sc00155.1 maker exon 112154 112238 . + . ID=Zjn_sc00155.1.g00270.1.sm.mkhc:exon:2
Zjn_sc00155.1 maker exon 112556 112620 . + . ID=Zjn_sc00155.1.g00270.1.sm.mkhc:exon:3
Zjn_sc00155.1 maker exon 112760 112817 . + . ID=Zjn_sc00155.1.g00270.1.sm.mkhc:exon:4
Zjn_sc00155.1 maker exon 113105 113146 . + . ID=Zjn_sc00155.1.g00270.1.sm.mkhc:exon:5
Zjn_sc00155.1 maker exon 113996 114092 . + . ID=Zjn_sc00155.1.g00270.1.sm.mkhc:exon:6
Zjn_sc00155.1 maker exon 115067 115164 . + . ID=Zjn_sc00155.1.g00270.1.sm.mkhc:exon:7

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