Z. japonica Nagirizaki
Zjn_sc00152.1.g00680.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G64230.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 148 1 148 5e-79 100 91.2 98
Subject 148 1 148
Annot | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148
NR ref|NP_001045711.2| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 148 1 148 8e-81 100 98.6 99.3
Subject 148 1 148
Annot Os02g0120600 [Oryza sativa Japonica Group] gi|573918312|ref|XP_006646798.1| PREDICTED: ubiquitin-conjugating enzyme E2 28-like [Oryza brachyantha] gi|41052626|dbj|BAD08135.1| ubiquitin-conjugating enzyme [Oryza sativa Japonica Group] gi|41052739|dbj|BAD07595.1| ubiquitin-conjugating enzyme [Oryza sativa Japonica Group] gi|125580602|gb|EAZ21533.1| hypothetical protein OsJ_05159 [Oryza sativa Japonica Group] gi|255670554|dbj|BAF07625.2| Os02g0120600 [Oryza sativa Japonica Group] gi|341870579|gb|AEK99329.1| ubiquitin-conjugating enzyme [Oryza sativa Japonica Group]
IRGSP Os02t0120600-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 148 1 148 7e-84 100 98.6 99.3
Subject 148 1 148
Annot
Sbicolor Sobic.004G017800.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 148 1 148 2e-82 100 95.9 98.6
Subject 148 1 148
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00152.1.g00680.1.am.mkhc length: 148 aa.
IPR000608 Ubiquitin-conjugating enzyme, E2
method AccNumber shortName E-value location
Molecular Function GO:0016881 acid-amino acid ligase activity    
HMMPfam PF00179 UQ_con 5.2e-52 5-141
ProfileScan PS50127 UBIQUITIN_CONJUGAT_2 47.618 4-136
IPR016135 Ubiquitin-conjugating enzyme/RWD-like
Gene3D G3DSA:3.10.110.10 no description 5.1e-79 1-147
superfamily SSF54495 UBC-like 8.8e-65 1-148
IPR023313 Ubiquitin-conjugating enzyme, active site
PatternScan PS00183 UBIQUITIN_CONJUGAT_1 NA 74-89
no_ID  
HMMPanther PTHR24068 FAMILY 2.5e-112 1-147
HMMSmart SM00212 Ubiquitin-conjugating 1.1e-76 4-147
Pseudomolecule
Chromosome Start End Strand
7309511312277+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00152.1 maker exon 309511 310050 . + . ID=Zjn_sc00152.1.g00680.1.am.mkhc:exon:1
Zjn_sc00152.1 maker exon 310143 310270 . + . ID=Zjn_sc00152.1.g00680.1.am.mkhc:exon:2
Zjn_sc00152.1 maker exon 310379 310483 . + . ID=Zjn_sc00152.1.g00680.1.am.mkhc:exon:3
Zjn_sc00152.1 maker exon 310568 312277 . + . ID=Zjn_sc00152.1.g00680.1.am.mkhc:exon:4

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