Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00152.1.g00670.1.sm.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00152.1)

BLAST

TAIR10	AT2G16910.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	480	210	437	2e-44	119	22.5	28.5
		Subject	571	312	519
		Annot	\| Symbols: AMS \| basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr2:7331721-7334077 FORWARD LENGTH=571
NR	ref\|XP_012700934.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	480	1	480	e-150	112.9	71	77.7
		Subject	542	91	542
		Annot	PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2 [Setaria italica] gi\|835964332\|ref\|XP_012700935.1\| PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2 [Setaria italica] gi\|835964335\|ref\|XP_012700936.1\| PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2 [Setaria italica] gi\|835964340\|ref\|XP_012700937.1\| PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2 [Setaria italica]
IRGSP	Os02t0120500-02_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	480	1	433	e-106	115	53.5	60.2
		Subject	552	95	505
		Annot
Sbicolor	Sobic.004G017500.2.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	480	1	480	e-142	119	69.4	75.4
		Subject	571	87	571
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Zjn_sc00152.1.g00670.1.sm.mk				length: 480 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0046983	protein dimerization activity
Gene3D	G3DSA:4.10.280.10	no description	8.4e-16	215-269
HMMPfam	PF00010	HLH	1.6e-10	215-258
HMMSmart	SM00353	helix	4.9e-16	214-263
ProfileScan	PS50888	BHLH	15.974	208-257
superfamily	SSF47459	HLH,	9.7e-19	206-290
no_ID
HMMPanther	PTHR23042	CIRCADIAN	1.4e-27	206-270
HMMPanther	PTHR23042:SF21	BHLH	1.4e-27	206-270
Seg	seg	seg	NA	127-152 167-198 201-207 425-442

Pseudomolecule

Chromosome	Start	End	Strand
7	303379	305302	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00152.1	maker_non_over	exon	303379	303618	.	-	.	ID=Zjn_sc00152.1.g00670.1.sm.mk:exon:5
Zjn_sc00152.1	maker_non_over	exon	303666	304148	.	-	.	ID=Zjn_sc00152.1.g00670.1.sm.mk:exon:4
Zjn_sc00152.1	maker_non_over	exon	304272	304838	.	-	.	ID=Zjn_sc00152.1.g00670.1.sm.mk:exon:3
Zjn_sc00152.1	maker_non_over	exon	305062	305142	.	-	.	ID=Zjn_sc00152.1.g00670.1.sm.mk:exon:2
Zjn_sc00152.1	maker_non_over	exon	305231	305302	.	-	.	ID=Zjn_sc00152.1.g00670.1.sm.mk:exon:1