Z. japonica Nagirizaki
Zjn_sc00144.1.g00230.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G38620.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 466 188 439 5e-74 60.5 31.5 35.6
Subject 282 1 240
Annot | Symbols: ATMYB4, MYB4 | myb domain protein 4 | chr4:18053866-18054876 FORWARD LENGTH=282
NR ref|XP_004978868.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 466 188 466 e-100 60.1 44.8 47.2
Subject 280 1 279
Annot PREDICTED: myb-related protein Zm38-like [Setaria italica]
IRGSP Os11t0180900-00_chr11_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 466 188 445 1e-90 63.3 38.4 40.8
Subject 295 1 268
Annot
Sbicolor Sobic.005G062000.1.p|Chr05|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 466 182 466 1e-91 93.6 43.8 46.6
Subject 436 116 435
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00144.1.g00230.1.am.mk length: 466 aa.
IPR001005 SANT/Myb domain
method AccNumber shortName E-value location
Molecular Function GO:0003682 chromatin binding    
HMMPfam PF00249 Myb_DNA-binding 1.1e-15 201-248
254-298
HMMSmart SM00717 SANT 4e-18 200-250
253-301
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 6e-27 192-251
252-303
superfamily SSF46689 Homeodomain-like 1.6e-26 201-300
IPR017930 Myb domain
ProfileScan PS51294 HTH_MYB 16.206 249-303
196-248
no_ID  
HMMPanther PTHR10641 MYB-LIKE 1.6e-107 177-402
HMMPanther PTHR10641:SF203SUBFAMILY NOT 1.6e-107 177-402
Seg seg seg NA 88-95
150-157
318-338
339-354
375-386
400-411
433-443
Pseudomolecule
Chromosome Start End Strand
910505241057039-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00144.1 maker_non_over exon 143753 143961 . + . ID=Zjn_sc00144.1.g00230.1.am.mk:exon:1
Zjn_sc00144.1 maker_non_over exon 145860 145952 . + . ID=Zjn_sc00144.1.g00230.1.am.mk:exon:2
Zjn_sc00144.1 maker_non_over exon 145984 146106 . + . ID=Zjn_sc00144.1.g00230.1.am.mk:exon:3
Zjn_sc00144.1 maker_non_over exon 149001 149120 . + . ID=Zjn_sc00144.1.g00230.1.am.mk:exon:4
Zjn_sc00144.1 maker_non_over exon 149163 149311 . + . ID=Zjn_sc00144.1.g00230.1.am.mk:exon:5
Zjn_sc00144.1 maker_non_over exon 149420 149549 . + . ID=Zjn_sc00144.1.g00230.1.am.mk:exon:6
Zjn_sc00144.1 maker_non_over exon 149692 150268 . + . ID=Zjn_sc00144.1.g00230.1.am.mk:exon:7

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