Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00143.1.g00650.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00143.1)

BLAST

TAIR10	AT1G14290.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	490	1	252	e-110	52.9	36.7	43.5
		Subject	259	2	252
		Annot	\| Symbols: SBH2 \| sphingoid base hydroxylase 2 \| chr1:4880307-4881784 REVERSE LENGTH=259
NR	ref\|XP_006655936.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	490	1	256	e-141	53.9	49	50.4
		Subject	264	1	256
		Annot	PREDICTED: sphinganine C(4)-monooxygenase 1-like [Oryza brachyantha]
IRGSP	Os06t0226950-01_chr06_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	490	1	256	e-144	53.9	48.6	50.6
		Subject	264	1	256
		Annot
Sbicolor	Sobic.010G092200.1.p\|Chr10\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	490	1	256	e-142	53.7	48.6	49.8
		Subject	263	1	255
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR006694	Fatty acid hydroxylase
Zjn_sc00143.1.g00650.1.am.mk				length: 490 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005506	iron ion binding
Biological Process	GO:0006633	fatty acid biosynthetic process
Molecular Function	GO:0016491	oxidoreductase activity
Biological Process	GO:0055114	oxidation-reduction process
HMMPfam	PF04116	FA_hydroxylase	9.5e-18	98-212
no_ID
HMMPanther	PTHR11863	STEROL	2.8e-136	5-252
HMMPanther	PTHR11863:SF3	SUR2	2.8e-136	5-252
Seg	seg	seg	NA	363-375 437-462

Pseudomolecule

Chromosome	Start	End	Strand
19	2717978	2720866	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00143.1	maker_non_over	exon	343746	343973	.	+	.	ID=Zjn_sc00143.1.g00650.1.am.mk:exon:1
Zjn_sc00143.1	maker_non_over	exon	344595	345122	.	+	.	ID=Zjn_sc00143.1.g00650.1.am.mk:exon:2
Zjn_sc00143.1	maker_non_over	exon	345791	345851	.	+	.	ID=Zjn_sc00143.1.g00650.1.am.mk:exon:3
Zjn_sc00143.1	maker_non_over	exon	345956	346404	.	+	.	ID=Zjn_sc00143.1.g00650.1.am.mk:exon:4
Zjn_sc00143.1	maker_non_over	exon	346428	346634	.	+	.	ID=Zjn_sc00143.1.g00650.1.am.mk:exon:5