Z. japonica Nagirizaki
Zjn_sc00143.1.g00420.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G73590.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 760 166 760 0.0 81.8 56.4 62.6
Subject 622 1 622
Annot | Symbols: PIN1, ATPIN1 | Auxin efflux carrier family protein | chr1:27659772-27662876 FORWARD LENGTH=622
NR ref|XP_004965062.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 760 166 760 0.0 78.6 74.3 75.9
Subject 597 1 597
Annot PREDICTED: probable auxin efflux carrier component 1c [Setaria italica]
IRGSP Os06t0232300-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 760 166 760 0.0 77.9 70.5 71.8
Subject 592 1 592
Annot
Sbicolor Sobic.010G095100.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 760 166 760 0.0 79.7 73.6 76.1
Subject 606 1 606
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00143.1.g00420.1.am.mk length: 760 aa.
IPR004776 Auxin efflux carrier
method AccNumber shortName E-value location
Cellular Component GO:0016021 integral to membrane    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF03547 Mem_trans 6.2e-187 174-755
IPR014024 Auxin efflux carrier, plant type
HMMTigr TIGR00946 2a69: 4.3e-167 166-760
no_ID  
HMMPanther PTHR31752 FAMILY 0 167-760
HMMPanther PTHR31752:SF0 SUBFAMILY 0 167-760
Seg seg seg NA 34-42
470-493
564-579
Pseudomolecule
Chromosome Start End Strand
1928371152841781+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00143.1 maker_non_over exon 222831 222897 . - . ID=Zjn_sc00143.1.g00420.1.am.mk:exon:8
Zjn_sc00143.1 maker_non_over exon 223050 223126 . - . ID=Zjn_sc00143.1.g00420.1.am.mk:exon:7
Zjn_sc00143.1 maker_non_over exon 223402 223559 . - . ID=Zjn_sc00143.1.g00420.1.am.mk:exon:6
Zjn_sc00143.1 maker_non_over exon 223644 223729 . - . ID=Zjn_sc00143.1.g00420.1.am.mk:exon:5
Zjn_sc00143.1 maker_non_over exon 223841 224114 . - . ID=Zjn_sc00143.1.g00420.1.am.mk:exon:4
Zjn_sc00143.1 maker_non_over exon 224203 225393 . - . ID=Zjn_sc00143.1.g00420.1.am.mk:exon:3
Zjn_sc00143.1 maker_non_over exon 226829 227125 . - . ID=Zjn_sc00143.1.g00420.1.am.mk:exon:2
Zjn_sc00143.1 maker_non_over exon 227365 227497 . - . ID=Zjn_sc00143.1.g00420.1.am.mk:exon:1

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