Z. japonica Nagirizaki
Zjn_sc00141.1.g00460.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G25480.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 216 14 216 1e-39 100 46.3 58.8
Subject 216 23 216
Annot | Symbols: DREB1A, CBF3, ATCBF3 | dehydration response element B1A | chr4:13018353-13019003 REVERSE LENGTH=216
NR gb|AAX28952.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 216 11 216 9e-56 99.1 70.4 75.5
Subject 214 7 214
Annot HvCBF5 [Hordeum vulgare subsp. vulgare]
IRGSP Os06t0127100-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 216 13 174 9e-52 99.1 58.3 63.9
Subject 214 6 174
Annot
Sbicolor Sobic.010G016500.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 216 15 216 2e-52 115.3 64.8 71.8
Subject 249 32 248
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00141.1.g00460.1.sm.mk length: 216 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 1.1e-05 41-52
64-80
Gene3D G3DSA:3.30.730.10 no description 1.7e-29 40-100
HMMPfam PF00847 AP2 8.6e-16 39-90
HMMSmart SM00380 DNA-binding 1.7e-25 40-104
ProfileScan PS51032 AP2_ERF 22.313 40-98
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 2.2e-22 39-101
no_ID  
HMMPanther PTHR31839 FAMILY 5.3e-81 3-216
Seg seg seg NA 72-93
132-149
195-210
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00141.1 maker_non_over exon 183706 184356 . - . ID=Zjn_sc00141.1.g00460.1.sm.mk:exon:1

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