Z. japonica Nagirizaki
Zjn_sc00141.1.g00400.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G63100.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 711 58 650 e-119 92.5 37.1 49.5
Subject 658 19 654
Annot | Symbols: | GRAS family transcription factor | chr1:23399391-23401367 REVERSE LENGTH=658
NR ref|XP_004964401.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 711 60 651 0.0 85.9 69.1 73.6
Subject 611 1 586
Annot PREDICTED: scarecrow-like protein 28 [Setaria italica]
IRGSP Os06t0127800-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 711 60 651 0.0 86.8 63.6 70.5
Subject 617 1 595
Annot
Sbicolor Sobic.010G017400.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 711 60 651 0.0 87.8 66.5 71.6
Subject 624 1 599
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00141.1.g00400.1.sm.mk length: 711 aa.
IPR005202 Transcription factor GRAS
method AccNumber shortName E-value location
HMMPfam PF03514 GRAS 5.1e-114 281-650
ProfileScan PS50985 GRAS 53.890 254-628
no_ID  
HMMPanther PTHR31636 FAMILY 9.3e-126 272-654
HMMPanther PTHR31636:SF0 SUBFAMILY 9.3e-126 272-654
Seg seg seg NA 30-41
92-107
199-207
215-232
351-361
537-552
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00141.1 maker_non_over exon 164208 164290 . + . ID=Zjn_sc00141.1.g00400.1.sm.mk:exon:1
Zjn_sc00141.1 maker_non_over exon 164605 166538 . + . ID=Zjn_sc00141.1.g00400.1.sm.mk:exon:2
Zjn_sc00141.1 maker_non_over exon 167527 167558 . + . ID=Zjn_sc00141.1.g00400.1.sm.mk:exon:3
Zjn_sc00141.1 maker_non_over exon 171091 171177 . + . ID=Zjn_sc00141.1.g00400.1.sm.mk:exon:4

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