Z. japonica Nagirizaki
Zjn_sc00132.1.g00460.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G60910.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 339 130 252 3e-37 71.4 26.3 32.4
Subject 242 1 185
Annot | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502736-24506013 REVERSE LENGTH=242
NR gb|AAB00081.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 339 130 339 4e-71 80.5 53.4 55.8
Subject 273 1 273
Annot MADS box protein [Zea mays]
IRGSP Os07t0108900-02_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 339 130 339 2e-61 78.8 47.5 49
Subject 267 1 267
Annot
Sbicolor Sobic.002G010100.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 339 130 339 7e-60 79.6 49.9 51.6
Subject 270 1 270
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00132.1.g00460.1.am.mk length: 339 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 1.3e-31 132-152
152-167
167-188
HMMPfam PF00319 SRF-TF 1.1e-29 138-188
HMMSmart SM00432 no description 5.5e-43 130-189
PatternScan PS00350 MADS_BOX_1 NA 132-186
ProfileScan PS50066 MADS_BOX_2 33.095 130-190
superfamily SSF55455 SRF-like 1.4e-30 131-223
IPR002487 Transcription factor, K-box
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 2.4e-15 189-254
ProfileScan PS51297 K_BOX 11.471 169-257
no_ID  
Coil coil coiled-coil NA 203-253
HMMPanther PTHR11945 MADS 2.3e-57 121-292
HMMPanther PTHR11945:SF19 MADS 2.3e-57 121-292
Seg seg seg NA 67-80
198-217
243-264
272-278
304-324
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00132.1 maker_non_over exon 244297 244435 . - . ID=Zjn_sc00132.1.g00460.1.am.mk:exon:9
Zjn_sc00132.1 maker_non_over exon 244512 244678 . - . ID=Zjn_sc00132.1.g00460.1.am.mk:exon:8
Zjn_sc00132.1 maker_non_over exon 244820 244861 . - . ID=Zjn_sc00132.1.g00460.1.am.mk:exon:7
Zjn_sc00132.1 maker_non_over exon 245158 245257 . - . ID=Zjn_sc00132.1.g00460.1.am.mk:exon:6
Zjn_sc00132.1 maker_non_over exon 249367 249567 . - . ID=Zjn_sc00132.1.g00460.1.am.mk:exon:5
Zjn_sc00132.1 maker_non_over exon 249640 249771 . - . ID=Zjn_sc00132.1.g00460.1.am.mk:exon:4
Zjn_sc00132.1 maker_non_over exon 250411 250468 . - . ID=Zjn_sc00132.1.g00460.1.am.mk:exon:3
Zjn_sc00132.1 maker_non_over exon 251518 251583 . - . ID=Zjn_sc00132.1.g00460.1.am.mk:exon:2
Zjn_sc00132.1 maker_non_over exon 252179 252293 . - . ID=Zjn_sc00132.1.g00460.1.am.mk:exon:1

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