Z. japonica Nagirizaki
Zjn_sc00132.1.g00100.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G08150.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 739 585 735 5e-57 53.9 15.4 17.6
Subject 398 246 397
Annot | Symbols: KNAT1, BP, BP1 | KNOTTED-like from Arabidopsis thaliana | chr4:5147969-5150610 REVERSE LENGTH=398
NR dbj|BAC57683.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 739 345 736 e-125 55.8 36.8 39.6
Subject 412 25 412
Annot KNOX class homeodomain protein [Oryza sativa Japonica Group]
IRGSP Os07t0129700-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 739 579 736 6e-78 48 19.6 20.2
Subject 355 198 355
Annot
Sbicolor Sobic.002G023900.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 739 578 736 6e-80 48.2 19.9 20.4
Subject 356 198 356
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00132.1.g00100.1.am.mk length: 739 aa.
IPR001356 Homeobox domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMSmart SM00389 Homeodomain 4.4e-13 639-704
ProfileScan PS50071 HOMEOBOX_2 12.892 637-700
IPR005539 ELK
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03789 ELK 2.4e-09 617-638
ProfileScan PS51213 ELK 11.627 617-637
IPR005540 KNOX1
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03790 KNOX1 5.8e-21 398-439
IPR005541 KNOX2
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03791 KNOX2 1.8e-21 451-496
IPR008422 Homeobox KN domain
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF05920 Homeobox_KN 1.1e-14 657-696
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 1.9e-26 642-701
superfamily SSF46689 Homeodomain-like 1.9e-19 638-715
IPR017970 Homeobox, conserved site
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00027 HOMEOBOX_1 NA 675-698
no_ID  
HMMPanther PTHR11850 HOMEOBOX 4.3e-55 399-710
HMMPanther PTHR11850:SF15 HOMEOBOX 4.3e-55 399-710
Seg seg seg NA 6-29
53-69
251-299
322-370
496-511
514-528
618-633
639-648
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00132.1 maker_non_over exon 63170 63385 . - . ID=Zjn_sc00132.1.g00100.1.am.mk:exon:15
Zjn_sc00132.1 maker_non_over exon 63545 63798 . - . ID=Zjn_sc00132.1.g00100.1.am.mk:exon:14
Zjn_sc00132.1 maker_non_over exon 66387 66454 . - . ID=Zjn_sc00132.1.g00100.1.am.mk:exon:13
Zjn_sc00132.1 maker_non_over exon 66739 66772 . - . ID=Zjn_sc00132.1.g00100.1.am.mk:exon:12
Zjn_sc00132.1 maker_non_over exon 67320 67590 . - . ID=Zjn_sc00132.1.g00100.1.am.mk:exon:11
Zjn_sc00132.1 maker_non_over exon 67675 67785 . - . ID=Zjn_sc00132.1.g00100.1.am.mk:exon:10
Zjn_sc00132.1 maker_non_over exon 67952 68269 . - . ID=Zjn_sc00132.1.g00100.1.am.mk:exon:9
Zjn_sc00132.1 maker_non_over exon 68339 68571 . - . ID=Zjn_sc00132.1.g00100.1.am.mk:exon:8
Zjn_sc00132.1 maker_non_over exon 72204 72298 . - . ID=Zjn_sc00132.1.g00100.1.am.mk:exon:7
Zjn_sc00132.1 maker_non_over exon 72370 72408 . - . ID=Zjn_sc00132.1.g00100.1.am.mk:exon:6
Zjn_sc00132.1 maker_non_over exon 74407 74491 . - . ID=Zjn_sc00132.1.g00100.1.am.mk:exon:5
Zjn_sc00132.1 maker_non_over exon 75086 75127 . - . ID=Zjn_sc00132.1.g00100.1.am.mk:exon:4
Zjn_sc00132.1 maker_non_over exon 75207 75424 . - . ID=Zjn_sc00132.1.g00100.1.am.mk:exon:3
Zjn_sc00132.1 maker_non_over exon 76077 76127 . - . ID=Zjn_sc00132.1.g00100.1.am.mk:exon:2
Zjn_sc00132.1 maker_non_over exon 79064 79248 . - . ID=Zjn_sc00132.1.g00100.1.am.mk:exon:1

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