Z. japonica Nagirizaki
Zjn_sc00131.1.g00960.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G02380.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 376 24 372 8e-73 92.3 44.1 55.3
Subject 347 12 338
Annot | Symbols: COL2, ATCOL2 | CONSTANS-like 2 | chr3:487438-488624 REVERSE LENGTH=347
NR dbj|BAN00006.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 376 1 372 e-141 101.3 79 86.2
Subject 381 1 372
Annot heading date 1 [Setaria italica]
IRGSP Os06t0275000-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 376 1 372 e-120 105.1 73.4 78.7
Subject 395 1 386
Annot
Sbicolor Sobic.010G115800.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 376 1 373 e-142 109.3 76.6 84.3
Subject 411 1 402
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00131.1.g00960.1.sm.mk length: 376 aa.
IPR000315 Zinc finger, B-box
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00643 zf-B_box 1.9e-05 68-113
HMMSmart SM00336 B-Box-type 4.5e-08 23-70
71-113
ProfileScan PS50119 ZF_BBOX 10.978 28-70
66-113
IPR010402 CCT domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF06203 CCT 2.9e-18 312-355
ProfileScan PS51017 CCT 16.470 312-354
no_ID  
HMMPanther PTHR31319 FAMILY 3e-133 1-372
Seg seg seg NA 7-20
79-91
111-137
152-169
258-267
Pseudomolecule
Chromosome Start End Strand
1936250073626670+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00131.1 maker_non_over exon 550396 551181 . + . ID=Zjn_sc00131.1.g00960.1.sm.mk:exon:1
Zjn_sc00131.1 maker_non_over exon 551518 551848 . + . ID=Zjn_sc00131.1.g00960.1.sm.mk:exon:2
Zjn_sc00131.1 maker_non_over exon 552046 552059 . + . ID=Zjn_sc00131.1.g00960.1.sm.mk:exon:3

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