Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00127.1.g00320.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00127.1)

BLAST

TAIR10	AT5G53550.2		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	724	61	722	0.0	93.2	56.6	72.2
		Subject	675	23	670
		Annot	\| Symbols: YSL3 \| YELLOW STRIPE like 3 \| chr5:21756081-21758776 FORWARD LENGTH=675
NR	ref\|XP_008646003.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	724	14	724	0.0	97.5	73.3	81.8
		Subject	706	22	706
		Annot	PREDICTED: probable metal-nicotianamine transporter YSL16 isoform X2 [Zea mays]
IRGSP	Os02t0650300-01_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	724	29	724	0.0	92.8	68.9	79
		Subject	672	3	672
		Annot
Sbicolor	Sobic.004G299700.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	724	24	724	0.0	97.4	72.7	81.6
		Subject	705	29	705
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR004813	Oligopeptide transporter, OPT superfamily
Zjn_sc00127.1.g00320.1.am.mk				length: 724 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0055085	transmembrane transport
HMMPfam	PF03169	OPT	3.4e-119	79-707
HMMTigr	TIGR00728	OPT_sfam:	7.1e-100	72-701
no_ID
HMMPanther	PTHR31645	FAMILY	8.1e-263	47-722
HMMPanther	PTHR31645:SF0	SUBFAMILY	8.1e-263	47-722
Seg	seg	seg	NA	55-71 399-416 516-527

Pseudomolecule

No data.

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00127.1	maker_non_over	exon	281798	282729	.	-	.	ID=Zjn_sc00127.1.g00320.1.am.mk:exon:8
Zjn_sc00127.1	maker_non_over	exon	282823	282940	.	-	.	ID=Zjn_sc00127.1.g00320.1.am.mk:exon:7
Zjn_sc00127.1	maker_non_over	exon	283029	283218	.	-	.	ID=Zjn_sc00127.1.g00320.1.am.mk:exon:6
Zjn_sc00127.1	maker_non_over	exon	283328	283423	.	-	.	ID=Zjn_sc00127.1.g00320.1.am.mk:exon:5
Zjn_sc00127.1	maker_non_over	exon	283524	283651	.	-	.	ID=Zjn_sc00127.1.g00320.1.am.mk:exon:4
Zjn_sc00127.1	maker_non_over	exon	283829	283998	.	-	.	ID=Zjn_sc00127.1.g00320.1.am.mk:exon:3
Zjn_sc00127.1	maker_non_over	exon	284022	284502	.	-	.	ID=Zjn_sc00127.1.g00320.1.am.mk:exon:2
Zjn_sc00127.1	maker_non_over	exon	284548	284607	.	-	.	ID=Zjn_sc00127.1.g00320.1.am.mk:exon:1