Z. japonica Nagirizaki
Zjn_sc00123.1.g00380.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G11070.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 408 198 311 5e-26 76.7 14.2 18.6
Subject 313 116 233
Annot | Symbols: WRKY41, AtWRKY41 | WRKY family transcription factor | chr4:6759303-6760763 FORWARD LENGTH=313
NR ref|XP_004973348.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 408 133 408 2e-64 84.8 45.6 51
Subject 346 12 344
Annot PREDICTED: probable WRKY transcription factor 41 [Setaria italica]
IRGSP Os08t0386200-01_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 408 132 408 2e-53 78.2 35.8 43.6
Subject 319 11 318
Annot
Sbicolor Sobic.002G174300.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 408 137 364 2e-42 80.4 26.2 34.3
Subject 328 36 294
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00123.1.g00380.1.am.mk length: 408 aa.
IPR003657 DNA-binding WRKY
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
Gene3D G3DSA:2.20.25.80 no description 1.2e-24 212-283
HMMPfam PF03106 WRKY 1.7e-23 224-283
HMMSmart SM00774 DNA 1.3e-34 223-285
ProfileScan PS50811 WRKY 22.641 218-286
superfamily SSF118290 WRKY 6.1e-22 214-287
no_ID  
HMMPanther PTHR32096 FAMILY 8e-15 229-323
HMMPanther PTHR32096:SF4 SUBFAMILY 8e-15 229-323
Seg seg seg NA 88-112
143-153
189-205
215-226
Pseudomolecule
Chromosome Start End Strand
1374204537425458+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00123.1 maker_non_over exon 491212 491321 . + . ID=Zjn_sc00123.1.g00380.1.am.mk:exon:1
Zjn_sc00123.1 maker_non_over exon 492622 492737 . + . ID=Zjn_sc00123.1.g00380.1.am.mk:exon:2
Zjn_sc00123.1 maker_non_over exon 495186 495556 . + . ID=Zjn_sc00123.1.g00380.1.am.mk:exon:3
Zjn_sc00123.1 maker_non_over exon 495588 496217 . + . ID=Zjn_sc00123.1.g00380.1.am.mk:exon:4

Top