Z. japonica Nagirizaki
Zjn_sc00115.1.g00490.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G45400.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 132 4 116 1e-28 646.2 44.7 62.9
Subject 853 635 749
Annot | Symbols: RPA70C, ATRPA70C | Replication factor-A protein 1-related | chr5:18398990-18401644 FORWARD LENGTH=853
NR ref|XP_002439140.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 132 1 130 8e-51 706.8 70.5 85.6
Subject 933 644 773
Annot hypothetical protein SORBIDRAFT_09g001260 [Sorghum bicolor] gi|190688743|gb|ACE86406.1| replication protein A1-like protein [Sorghum bicolor] gi|241944425|gb|EES17570.1| hypothetical protein SORBIDRAFT_09g001260 [Sorghum bicolor]
IRGSP Os05t0111000-01_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 132 3 130 2e-34 720.5 53.8 70.5
Subject 951 645 769
Annot
Sbicolor Sobic.009G012600.1.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 132 1 130 7e-54 706.8 70.5 85.6
Subject 933 644 773
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00115.1.g00490.1.sm.mk length: 132 aa.
IPR012340 Nucleic acid-binding, OB-fold
method AccNumber shortName E-value location
Gene3D G3DSA:2.40.50.140 no description 5e-32 4-108
superfamily SSF50249 Nucleic 2.4e-30 1-110
IPR013955 Replication factor A, C-terminal
HMMPfam PF08646 Rep_fac-A_C 3.2e-30 2-100
no_ID  
HMMPanther PTHR23273 REPLICATION 3.6e-35 1-116
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00115.1 maker_non_over exon 312293 312677 . + . ID=Zjn_sc00115.1.g00490.1.sm.mk:exon:1
Zjn_sc00115.1 maker_non_over exon 314254 314267 . + . ID=Zjn_sc00115.1.g00490.1.sm.mk:exon:2

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