Z. japonica Nagirizaki
Zjn_sc00112.1.g00200.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G14540.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 259 45 159 5e-50 62.2 35.5 38.2
Subject 161 14 124
Annot | Symbols: NF-YB3 | nuclear factor Y, subunit B3 | chr4:8344663-8345148 FORWARD LENGTH=161
NR gb|EMT00567.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 259 1 259 5e-82 96.1 70.3 76.4
Subject 249 1 249
Annot Nuclear transcription factor Y subunit B-3 [Aegilops tauschii]
IRGSP Os08t0174500-02_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 259 1 238 2e-64 111.2 63.3 69.5
Subject 288 1 262
Annot
Sbicolor Sobic.007G059500.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 259 1 259 8e-83 106.2 76.8 79.5
Subject 275 1 275
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00112.1.g00200.1.am.mk length: 259 aa.
IPR003956 Transcription factor, NFYB/HAP3, conserved site
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00685 NFYB_HAP3 NA 87-103
IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase
Molecular Function GO:0003677 DNA binding    
FPrintScan PR00615 CCAATSUBUNTA 3.8e-18 84-102
103-121
122-140
HMMPanther PTHR11064:SF9 CCAAT-BINDING 4.9e-75 50-149
IPR003958 Transcription factor CBF/NF-Y/archaeal histone
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMPfam PF00808 CBFD_NFYB_HMF 3.4e-27 56-120
IPR009072 Histone-fold
Molecular Function GO:0046982 protein heterodimerization activity    
Gene3D G3DSA:1.10.20.10 no description 1e-50 48-149
superfamily SSF47113 Histone-fold 1.4e-35 53-154
no_ID  
HMMPanther PTHR11064 CCAAT-BINDING 4.9e-75 50-149
Seg seg seg NA 26-50
203-223
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00112.1 maker_non_over exon 126272 127051 . + . ID=Zjn_sc00112.1.g00200.1.am.mk:exon:1

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