Z. japonica Nagirizaki
Zjn_sc00108.1.g00380.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G01180.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 193 81 193 2e-52 410.4 46.6 52.3
Subject 792 680 792
Annot | Symbols: AtSS2, SS2 | starch synthase 2 | chr3:62456-65678 REVERSE LENGTH=792
NR ref|XP_006662378.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 193 81 193 4e-58 365.3 53.9 57.5
Subject 705 593 705
Annot PREDICTED: soluble starch synthase 2-1, chloroplastic/amyloplastic-like [Oryza brachyantha]
IRGSP Os10t0437600-00_chr10_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 193 81 193 7e-60 388.1 52.3 57.5
Subject 749 637 749
Annot
Sbicolor Sobic.001G239500.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 193 81 193 1e-59 396.4 52.8 56.5
Subject 765 653 765
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00108.1.g00380.1.sm.mk length: 193 aa.
IPR013534 Starch synthase, catalytic domain
method AccNumber shortName E-value location
HMMPfam PF08323 Glyco_transf_5 7.3e-08 10-38
39-84
no_ID  
Gene3D G3DSA:3.40.50.2000 no description 1.1e-33 81-171
HMMPanther PTHR12526 GLYCOSYLTRANSFERASE 5.4e-54 81-193
HMMPanther PTHR12526:SF17 STARCH 5.4e-54 81-193
superfamily SSF53756 UDP-Glycosyltransferase/glycogen 2.9e-05 80-191
11-80
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00108.1 maker_non_over exon 307515 307545 . + . ID=Zjn_sc00108.1.g00380.1.sm.mk:exon:1
Zjn_sc00108.1 maker_non_over exon 309223 309287 . + . ID=Zjn_sc00108.1.g00380.1.sm.mk:exon:2
Zjn_sc00108.1 maker_non_over exon 310262 310280 . + . ID=Zjn_sc00108.1.g00380.1.sm.mk:exon:3
Zjn_sc00108.1 maker_non_over exon 311196 311278 . + . ID=Zjn_sc00108.1.g00380.1.sm.mk:exon:4
Zjn_sc00108.1 maker_non_over exon 312284 312326 . + . ID=Zjn_sc00108.1.g00380.1.sm.mk:exon:5
Zjn_sc00108.1 maker_non_over exon 312900 313240 . + . ID=Zjn_sc00108.1.g00380.1.sm.mk:exon:6

Top