Z. japonica Nagirizaki
Zjn_sc00107.1.g01310.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G13290.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 471 114 325 1e-81 64.1 30.1 34.2
Subject 302 54 248
Annot | Symbols: DOT5, WIP6 | C2H2-like zinc finger protein | chr1:4550366-4551527 REVERSE LENGTH=302
NR ref|NP_001150708.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 471 1 355 e-132 79.8 59 65
Subject 376 1 375
Annot zinc finger, C2H2 type family protein [Zea mays] gi|195641252|gb|ACG40094.1| zinc finger, C2H2 type family protein [Zea mays] gi|414884957|tpg|DAA60971.1| TPA: zinc finger, C2H2 type family protein [Zea mays]
IRGSP Os09t0307400-00_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 471 1 322 e-109 83.7 48.2 51.6
Subject 394 1 346
Annot
Sbicolor Sobic.002G164700.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 471 1 325 e-135 78.6 56.5 61.4
Subject 370 1 332
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00107.1.g01310.1.am.mk length: 471 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 176-196
ProfileScan PS50157 ZINC_FINGER_C2H2_2 8.704 174-201
264-284
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 1.4e-05 174-193
250-284
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 58 174-196
227-259
264-284
no_ID  
HMMPanther PTHR11389 ZINC 1.9e-61 156-407
HMMPanther PTHR11389:SF379AZ2-RELATED T[156-407] 1.9e-61  
HMMPfam PF13894 zf-C2H2_4 0.0067 174-193
264-286
Seg seg seg NA 53-70
86-99
127-140
142-149
326-337
387-398
399-421
438-451
superfamily SSF57667 C2H2 0.00013 246-284
167-199
Pseudomolecule
Chromosome Start End Strand
191241748312420916+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00107.1 maker_non_over exon 722891 723460 . + . ID=Zjn_sc00107.1.g01310.1.am.mk:exon:1
Zjn_sc00107.1 maker_non_over exon 723630 724124 . + . ID=Zjn_sc00107.1.g01310.1.am.mk:exon:2
Zjn_sc00107.1 maker_non_over exon 725678 725755 . + . ID=Zjn_sc00107.1.g01310.1.am.mk:exon:3
Zjn_sc00107.1 maker_non_over exon 726052 726324 . + . ID=Zjn_sc00107.1.g01310.1.am.mk:exon:4

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