Z. japonica Nagirizaki
Zjn_sc00107.1.g01050.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G51840.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 30 439 e-152 99.1 57.5 72
Subject 436 22 433
Annot | Symbols: ACX4, ATSCX, ATG6 | acyl-CoA oxidase 4 | chr3:19225653-19229008 REVERSE LENGTH=436
NR ref|XP_002447453.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 38 440 0.0 95 77.5 83
Subject 418 9 418
Annot hypothetical protein SORBIDRAFT_06g001260 [Sorghum bicolor] gi|241938636|gb|EES11781.1| hypothetical protein SORBIDRAFT_06g001260 [Sorghum bicolor]
IRGSP Os05t0163700-01_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 35 438 e-153 97.7 57.5 71.1
Subject 430 23 424
Annot
Sbicolor Sobic.006G012800.2.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 9 440 0.0 97.3 79.5 86.1
Subject 428 2 428
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00107.1.g01050.1.sm.mk length: 440 aa.
IPR006089 Acyl-CoA dehydrogenase, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003995 acyl-CoA dehydrogenase activity    
Biological Process GO:0055114 oxidation-reduction process    
PatternScan PS00072 ACYL_COA_DH_1 NA 177-189
PatternScan PS00073 ACYL_COA_DH_2 NA 387-406
IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain
Molecular Function GO:0003995 acyl-CoA dehydrogenase activity    
Biological Process GO:0055114 oxidation-reduction process    
Gene3D G3DSA:2.40.110.10 no description 7.4e-27 175-269
HMMPfam PF02770 Acyl-CoA_dh_M 1.3e-17 175-224
IPR006092 Acyl-CoA dehydrogenase, N-terminal
Molecular Function GO:0003995 acyl-CoA dehydrogenase activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF02771 Acyl-CoA_dh_N 1.9e-20 60-168
IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal
Molecular Function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF00441 Acyl-CoA_dh_1 1.6e-26 287-428
superfamily SSF47203 Acyl-CoA 1.7e-35 280-430
IPR009100 Acyl-CoA dehydrogenase/oxidase
Biological Process GO:0008152 metabolic process    
Molecular Function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors    
Biological Process GO:0055114 oxidation-reduction process    
superfamily SSF56645 Acyl-CoA 1.2e-59 46-284
IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal
Biological Process GO:0008152 metabolic process    
Molecular Function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors    
Molecular Function GO:0050660 flavin adenine dinucleotide binding    
Biological Process GO:0055114 oxidation-reduction process    
Gene3D G3DSA:1.10.540.10 no description 4e-32 47-169
no_ID  
Gene3D G3DSA:1.20.140.10 no description 3.2e-41 270-430
HMMPanther PTHR10909 ELECTRON 6.2e-207 15-431
HMMPanther PTHR10909:SF122PREDICTED: HYPOTHETICAL 6.2e-207 15-431
Seg seg seg NA 95-109
Pseudomolecule
Chromosome Start End Strand
191225211112254921+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00107.1 maker_non_over exon 557519 557552 . + . ID=Zjn_sc00107.1.g01050.1.sm.mk:exon:1
Zjn_sc00107.1 maker_non_over exon 557737 557847 . + . ID=Zjn_sc00107.1.g01050.1.sm.mk:exon:2
Zjn_sc00107.1 maker_non_over exon 557999 558105 . + . ID=Zjn_sc00107.1.g01050.1.sm.mk:exon:3
Zjn_sc00107.1 maker_non_over exon 558265 558342 . + . ID=Zjn_sc00107.1.g01050.1.sm.mk:exon:4
Zjn_sc00107.1 maker_non_over exon 558490 558613 . + . ID=Zjn_sc00107.1.g01050.1.sm.mk:exon:5
Zjn_sc00107.1 maker_non_over exon 558777 558850 . + . ID=Zjn_sc00107.1.g01050.1.sm.mk:exon:6
Zjn_sc00107.1 maker_non_over exon 558955 559014 . + . ID=Zjn_sc00107.1.g01050.1.sm.mk:exon:7
Zjn_sc00107.1 maker_non_over exon 559138 559247 . + . ID=Zjn_sc00107.1.g01050.1.sm.mk:exon:8
Zjn_sc00107.1 maker_non_over exon 559354 559519 . + . ID=Zjn_sc00107.1.g01050.1.sm.mk:exon:9
Zjn_sc00107.1 maker_non_over exon 559609 559857 . + . ID=Zjn_sc00107.1.g01050.1.sm.mk:exon:10
Zjn_sc00107.1 maker_non_over exon 559952 560044 . + . ID=Zjn_sc00107.1.g01050.1.sm.mk:exon:11
Zjn_sc00107.1 maker_non_over exon 560213 560329 . + . ID=Zjn_sc00107.1.g01050.1.sm.mk:exon:12

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