Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00106.1.g01430.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00106.1)

BLAST

TAIR10	AT2G01940.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	536	31	184	3e-80	83	23.7	25.4
		Subject	445	35	188
		Annot	\| Symbols: SGR5, ATIDD15 \| C2H2-like zinc finger protein \| chr2:432652-434917 FORWARD LENGTH=445
NR	ref\|XP_002444487.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	536	1	184	6e-96	100	31.5	32.1
		Subject	536	1	184
		Annot	hypothetical protein SORBIDRAFT_07g022700 [Sorghum bicolor] gi\|241940837\|gb\|EES13982.1\| hypothetical protein SORBIDRAFT_07g022700 [Sorghum bicolor]
IRGSP	Os08t0467100-02_chr08_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	536	1	184	9e-90	99.4	30.8	32.3
		Subject	533	1	180
		Annot
Sbicolor	Sobic.007G153300.1.p\|Chr07\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	536	1	184	6e-99	100	31.5	32.1
		Subject	536	1	184
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR007087	Zinc finger, C2H2
Zjn_sc00106.1.g01430.1.am.mk				length: 536 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0046872	metal ion binding
HMMPfam	PF00096	zf-C2H2	0.00061	69-91
PatternScan	PS00028	ZINC_FINGER_C2H2_1	NA	71-91
ProfileScan	PS50157	ZINC_FINGER_C2H2_2	11.635	69-91
IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function	GO:0003676	nucleic acid binding
Gene3D	G3DSA:3.30.160.60	no description	0.00026	68-91
IPR015880	Zinc finger, C2H2-like
HMMSmart	SM00355	zinc	2.3e+02	69-91 111-141 147-174
no_ID
HMMPanther	PTHR10593	SERINE/THREONINE-PROTEIN	1.8e-69	39-184
HMMPanther	PTHR10593:SF17	SUBFAMILY	1.8e-69	39-184
Seg	seg	seg	NA	31-48 201-215 221-233 335-376 379-392 407-417 488-505 510-526
superfamily	SSF57667	C2H2	2.4e-07	67-168

Pseudomolecule

Chromosome	Start	End	Strand
13	9526380	9529057	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00106.1	maker_non_over	exon	684047	684307	.	-	.	ID=Zjn_sc00106.1.g01430.1.am.mk:exon:6
Zjn_sc00106.1	maker_non_over	exon	684716	685100	.	-	.	ID=Zjn_sc00106.1.g01430.1.am.mk:exon:5
Zjn_sc00106.1	maker_non_over	exon	685164	685453	.	-	.	ID=Zjn_sc00106.1.g01430.1.am.mk:exon:4
Zjn_sc00106.1	maker_non_over	exon	685550	685625	.	-	.	ID=Zjn_sc00106.1.g01430.1.am.mk:exon:3
Zjn_sc00106.1	maker_non_over	exon	685979	686429	.	-	.	ID=Zjn_sc00106.1.g01430.1.am.mk:exon:2
Zjn_sc00106.1	maker_non_over	exon	686577	686724	.	-	.	ID=Zjn_sc00106.1.g01430.1.am.mk:exon:1