Z. japonica Nagirizaki
Zjn_sc00106.1.g00920.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G10440.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 519 197 399 4e-59 57.4 21 28.1
Subject 298 31 234
Annot | Symbols: CYCD4;2 | cyclin d4;2 | chr5:3280611-3282342 REVERSE LENGTH=298
NR ref|XP_004973707.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 519 144 518 e-118 69.6 48.6 54.5
Subject 361 1 359
Annot PREDICTED: cyclin-D4-2-like [Setaria italica]
IRGSP Os08t0479300-01_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 519 144 519 e-101 73.8 43.7 52.4
Subject 383 1 383
Annot
Sbicolor Sobic.007G160300.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 519 144 518 e-115 71.9 48.6 55.9
Subject 373 1 371
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00106.1.g00920.1.am.mk length: 519 aa.
IPR004367 Cyclin, C-terminal domain
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
HMMPfam PF02984 Cyclin_C 2e-05 337-394
IPR006671 Cyclin, N-terminal
HMMPfam PF00134 Cyclin_N 7.5e-30 205-334
PatternScan PS00292 CYCLINS NA 235-266
IPR013763 Cyclin-like
Gene3D G3DSA:1.10.472.10 no description 4.5e-06 231-328
329-391
HMMSmart SM00385 domain 6e-16 240-328
superfamily SSF47954 Cyclin-like 1.9e-37 199-335
no_ID  
HMMPanther PTHR10177 CYCLINE 4.3e-96 200-519
HMMPanther PTHR10177:SF76 CYCLIN-D 4.3e-96 200-519
Seg seg seg NA 169-176
385-394
459-475
490-519
Pseudomolecule
Chromosome Start End Strand
1398240039826565+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00106.1 maker_non_over exon 386539 386871 . - . ID=Zjn_sc00106.1.g00920.1.am.mk:exon:7
Zjn_sc00106.1 maker_non_over exon 387057 387163 . - . ID=Zjn_sc00106.1.g00920.1.am.mk:exon:6
Zjn_sc00106.1 maker_non_over exon 387254 387455 . - . ID=Zjn_sc00106.1.g00920.1.am.mk:exon:5
Zjn_sc00106.1 maker_non_over exon 387548 387646 . - . ID=Zjn_sc00106.1.g00920.1.am.mk:exon:4
Zjn_sc00106.1 maker_non_over exon 387759 387845 . - . ID=Zjn_sc00106.1.g00920.1.am.mk:exon:3
Zjn_sc00106.1 maker_non_over exon 388308 388959 . - . ID=Zjn_sc00106.1.g00920.1.am.mk:exon:2
Zjn_sc00106.1 maker_non_over exon 389022 389101 . - . ID=Zjn_sc00106.1.g00920.1.am.mk:exon:1

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