Z. japonica Nagirizaki
Zjn_sc00106.1.g00160.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G07870.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 420 7 292 2e-15 99.3 21 33.3
Subject 417 27 360
Annot | Symbols: | F-box and associated interaction domains-containing protein | chr3:2510871-2512124 FORWARD LENGTH=417
NR ref|XP_002465250.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 420 7 366 4e-87 119 48.3 58.6
Subject 500 101 496
Annot hypothetical protein SORBIDRAFT_01g034970 [Sorghum bicolor] gi|241919104|gb|EER92248.1| hypothetical protein SORBIDRAFT_01g034970 [Sorghum bicolor]
IRGSP Os12t0492900-01_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 420 2 360 2e-52 100.7 40.5 51.7
Subject 423 6 417
Annot
Sbicolor Sobic.001G366900.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 420 7 366 4e-90 102.6 48.3 58.6
Subject 431 32 427
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00106.1.g00160.1.am.mk length: 420 aa.
IPR001810 F-box domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMSmart SM00256 A 5.4e-06 8-48
ProfileScan PS50181 FBOX 11.140 2-51
superfamily SSF81383 F-box 1.2e-08 3-42
IPR017451 F-box associated interaction domain
HMMTigr TIGR01640 F_box_assoc_1: 3.2e-18 97-255
no_ID  
Gene3D G3DSA:1.20.1280.50 no description 3e-05 3-40
HMMPfam PF12937 F-box-like 6.8e-08 6-42
Seg seg seg NA 364-370
378-388
Pseudomolecule
Chromosome Start End Strand
131012191010123555+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00106.1 maker_non_over exon 89549 89701 . - . ID=Zjn_sc00106.1.g00160.1.am.mk:exon:3
Zjn_sc00106.1 maker_non_over exon 89917 90219 . - . ID=Zjn_sc00106.1.g00160.1.am.mk:exon:2
Zjn_sc00106.1 maker_non_over exon 90388 91194 . - . ID=Zjn_sc00106.1.g00160.1.am.mk:exon:1

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