Z. japonica Nagirizaki
Zjn_sc00105.1.g01790.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G04730.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 328 5 279 2e-58 72 41.5 49.1
Subject 236 2 224
Annot | Symbols: IAA16 | indoleacetic acid-induced protein 16 | chr3:1288993-1290415 REVERSE LENGTH=236
NR ref|XP_004963100.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 328 1 279 1e-78 80.5 59.5 65.2
Subject 264 1 252
Annot PREDICTED: auxin-responsive protein IAA30-like [Setaria italica]
IRGSP Os12t0601300-01_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 328 1 279 2e-71 84.5 54.3 60.1
Subject 277 1 265
Annot
Sbicolor Sobic.008G156900.1.p|Chr08|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 328 32 279 4e-78 85.7 51.8 56.4
Subject 281 34 269
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00105.1.g01790.1.am.mk length: 328 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 2.3e-75 5-280
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 27.803 144-274
no_ID  
HMMPanther PTHR31734 FAMILY 3.4e-91 5-291
Seg seg seg NA 11-33
49-64
77-85
139-144
312-325
superfamily SSF54277 CAD 1.3e-18 131-272
Pseudomolecule
Chromosome Start End Strand
1671391247143400-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00105.1 maker_non_over exon 913589 913878 . + . ID=Zjn_sc00105.1.g01790.1.am.mk:exon:1
Zjn_sc00105.1 maker_non_over exon 915114 915373 . + . ID=Zjn_sc00105.1.g01790.1.am.mk:exon:2
Zjn_sc00105.1 maker_non_over exon 915606 915695 . + . ID=Zjn_sc00105.1.g01790.1.am.mk:exon:3
Zjn_sc00105.1 maker_non_over exon 916017 916152 . + . ID=Zjn_sc00105.1.g01790.1.am.mk:exon:4
Zjn_sc00105.1 maker_non_over exon 916251 916344 . + . ID=Zjn_sc00105.1.g01790.1.am.mk:exon:5
Zjn_sc00105.1 maker_non_over exon 917557 917591 . + . ID=Zjn_sc00105.1.g01790.1.am.mk:exon:6
Zjn_sc00105.1 maker_non_over exon 917784 917865 . + . ID=Zjn_sc00105.1.g01790.1.am.mk:exon:7

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