Z. japonica Nagirizaki
Zjn_sc00105.1.g00930.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G14440.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 773 228 773 0.0 77.5 48.6 55.8
Subject 599 60 598
Annot | Symbols: NCED3, ATNCED3, STO1, SIS7 | nine-cis-epoxycarotenoid dioxygenase 3 | chr3:4831678-4833477 REVERSE LENGTH=599
NR ref|XP_004963201.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 773 248 773 0.0 77.9 62.5 64.8
Subject 602 70 602
Annot PREDICTED: 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic [Setaria italica]
IRGSP Os03t0645900-00_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 773 248 773 0.0 78.7 59.1 62
Subject 608 81 608
Annot
Sbicolor Sobic.001G155300.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 773 239 773 0.0 79 58.7 62.1
Subject 611 75 611
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00105.1.g00930.1.am.mk length: 773 aa.
IPR004294 Carotenoid oxygenase
method AccNumber shortName E-value location
HMMPanther PTHR10543 BETA-CAROTENE 2.4e-273 232-773
HMMPfam PF03055 RPE65 9.6e-131 296-764
no_ID  
HMMPanther PTHR10543:SF1 9-CIS-EPOXYCAROTENOID 2.4e-273 232-773
Seg seg seg NA 85-104
182-206
232-237
Pseudomolecule
Chromosome Start End Strand
1675666517569710+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00105.1 maker_non_over exon 487279 488883 . - . ID=Zjn_sc00105.1.g00930.1.am.mk:exon:3
Zjn_sc00105.1 maker_non_over exon 489391 489721 . - . ID=Zjn_sc00105.1.g00930.1.am.mk:exon:2
Zjn_sc00105.1 maker_non_over exon 489953 490338 . - . ID=Zjn_sc00105.1.g00930.1.am.mk:exon:1

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