Z. japonica Nagirizaki
Zjn_sc00103.1.g01100.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G04340.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 213 2 178 7e-26 111.7 36.6 49.3
Subject 238 45 232
Annot | Symbols: C2H2, CZF2, ZAT6 | zinc finger of Arabidopsis thaliana 6 | chr5:1216321-1217037 REVERSE LENGTH=238
NR ref|XP_010232281.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 213 1 178 5e-53 97.7 57.3 67.1
Subject 208 2 195
Annot PREDICTED: zinc finger protein ZAT6-like [Brachypodium distachyon]
IRGSP Os11t0340477-01_chr11_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 213 3 183 5e-49 93.9 57.3 63.8
Subject 200 5 196
Annot
Sbicolor Sobic.001G330400.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 213 1 179 7e-49 97.2 58.2 65.3
Subject 207 1 197
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00103.1.g01100.1.sm.mk length: 213 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 46-66
102-122
ProfileScan PS50157 ZINC_FINGER_C2H2_2 9.328 44-71
100-122
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 0.00048 41-67
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 0.83 44-66
100-122
no_ID  
HMMPanther PTHR26374 FAMILY 3.8e-23 41-140
HMMPanther PTHR26374:SF121SUBFAMILY NOT 3.8e-23 41-140
HMMPfam PF13912 zf-C2H2_6 1.4e-08 44-68
100-122
Seg seg seg NA 75-96
126-141
202-212
superfamily SSF57667 C2H2 1.1e-10 42-122
Pseudomolecule
Chromosome Start End Strand
21105828611059714-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00103.1 maker_non_over exon 922382 922485 . - . ID=Zjn_sc00103.1.g01100.1.sm.mk:exon:2
Zjn_sc00103.1 maker_non_over exon 923273 923810 . - . ID=Zjn_sc00103.1.g01100.1.sm.mk:exon:1

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