Z. japonica Nagirizaki
Zjn_sc00103.1.g00580.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G04230.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 729 98 729 0.0 95.2 59.5 68.9
Subject 694 12 694
Annot | Symbols: PAL3, ATPAL3 | phenyl alanine ammonia-lyase 3 | chr5:1160831-1163707 FORWARD LENGTH=694
NR ref|NP_001168086.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 729 85 729 0.0 98.1 78.6 81.3
Subject 715 11 715
Annot phenylalanine ammonia-lyase [Zea mays] gi|223945919|gb|ACN27043.1| unknown [Zea mays] gi|413937862|gb|AFW72413.1| phenylalanine ammonia-lyase [Zea mays]
IRGSP Os02t0627100-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 729 85 729 0.0 97.8 77.6 81.3
Subject 713 10 713
Annot
Sbicolor Sobic.004G220600.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 729 85 729 0.0 98.4 78.9 82.2
Subject 717 13 717
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00103.1.g00580.1.am.mk length: 729 aa.
IPR001106 Aromatic amino acid lyase
method AccNumber shortName E-value location
Biological Process GO:0009058 biosynthetic process    
Molecular Function GO:0016841 ammonia-lyase activity    
HMMPfam PF00221 Lyase_aromatic 1.2e-151 130-573
IPR005922 Phenylalanine ammonia-lyase
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0006559 L-phenylalanine catabolic process    
Molecular Function GO:0016841 ammonia-lyase activity    
HMMTigr TIGR01226 phe_am_lyase: 5.7e-252 99-551
IPR008948 L-Aspartase-like
Molecular Function GO:0003824 catalytic activity    
superfamily SSF48557 L-aspartase-like 1.2e-232 98-729
IPR022313 Phenylalanine/histidine ammonia-lyases, active site
Molecular Function GO:0016841 ammonia-lyase activity    
PatternScan PS00488 PAL_HISTIDASE NA 273-289
IPR023144 Phenylalanine ammonia-lyase, shielding domain
Gene3D G3DSA:1.10.274.20 no description 8.3e-46 563-663
IPR024083 Fumarase/histidase, N-terminal
Gene3D G3DSA:1.10.275.10 no description 1e-88 98-336
no_ID  
Gene3D G3DSA:1.20.200.10 no description 9e-85 337-562
HMMPanther PTHR32364 FAMILY 0 82-729
HMMPanther PTHR32364:SF2 SUBFAMILY 0 82-729
Seg seg seg NA 140-156
639-660
Pseudomolecule
Chromosome Start End Strand
21061662610619753+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00103.1 maker_non_over exon 480722 480738 . + . ID=Zjn_sc00103.1.g00580.1.am.mk:exon:1
Zjn_sc00103.1 maker_non_over exon 481301 481533 . + . ID=Zjn_sc00103.1.g00580.1.am.mk:exon:2
Zjn_sc00103.1 maker_non_over exon 481724 483123 . + . ID=Zjn_sc00103.1.g00580.1.am.mk:exon:3
Zjn_sc00103.1 maker_non_over exon 483310 483849 . + . ID=Zjn_sc00103.1.g00580.1.am.mk:exon:4

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