Z. japonica Nagirizaki
Zjn_sc00103.1.g00510.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G14540.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 218 1 167 2e-54 73.9 50 55.5
Subject 161 1 153
Annot | Symbols: NF-YB3 | nuclear factor Y, subunit B3 | chr4:8344663-8345148 FORWARD LENGTH=161
NR ref|NP_001050358.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 218 1 135 5e-67 100.5 59.2 61
Subject 219 1 140
Annot Os03g0413000 [Oryza sativa Japonica Group] gi|41469085|gb|AAS07059.1| putative DNA binding transcription factor [Oryza sativa Japonica Group] gi|108708790|gb|ABF96585.1| CCAAT-binding transcription factor subunit A, putative, expressed [Oryza sativa Japonica Group] gi|113548829|dbj|BAF12272.1| Os03g0413000 [Oryza sativa Japonica Group] gi|148921418|dbj|BAF64448.1| HAP3 subunit of HAP complex [Oryza sativa Japonica Group] gi|215765677|dbj|BAG87374.1| unnamed protein product [Oryza sativa Japonica Group]
IRGSP Os03t0413000-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 218 1 135 5e-70 100.5 59.2 61
Subject 219 1 140
Annot
Sbicolor Sobic.001G338700.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 218 1 136 2e-67 103.2 57.8 58.7
Subject 225 1 136
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00103.1.g00510.1.sm.mk length: 218 aa.
IPR003956 Transcription factor, NFYB/HAP3, conserved site
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00685 NFYB_HAP3 NA 58-74
IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase
Molecular Function GO:0003677 DNA binding    
FPrintScan PR00615 CCAATSUBUNTA 7.5e-20 55-73
74-92
93-111
HMMPanther PTHR11064:SF9 CCAAT-BINDING 6.1e-102 1-213
IPR003958 Transcription factor CBF/NF-Y/archaeal histone
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMPfam PF00808 CBFD_NFYB_HMF 7.1e-28 27-91
IPR009072 Histone-fold
Molecular Function GO:0046982 protein heterodimerization activity    
Gene3D G3DSA:1.10.20.10 no description 2.4e-55 19-146
superfamily SSF47113 Histone-fold 6.1e-38 24-151
no_ID  
HMMPanther PTHR11064 CCAAT-BINDING 6.1e-102 1-213
Seg seg seg NA 118-141
150-173
176-186
193-213
Pseudomolecule
Chromosome Start End Strand
21053359510534251+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00103.1 maker_non_over exon 397691 398347 . + . ID=Zjn_sc00103.1.g00510.1.sm.mk:exon:1

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