Z. japonica Nagirizaki
Zjn_sc00102.1.g00560.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G00460.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 605 82 545 e-140 78.2 42.5 52.9
Subject 473 44 473
Annot | Symbols: ATROPGEF3, ROPGEF3 | RHO guanyl-nucleotide exchange factor 3 | chr4:211146-213094 REVERSE LENGTH=473
NR ref|XP_008669880.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 605 59 536 0.0 92.4 62.1 67.4
Subject 559 88 545
Annot PREDICTED: pollen-specific kinase partner protein isoform X2 [Zea mays]
IRGSP Os10t0550300-00_chr10_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 605 63 537 0.0 79.2 59.3 66
Subject 479 19 472
Annot
Sbicolor Sobic.001G305300.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 605 60 536 0.0 80.8 62.6 67.3
Subject 489 17 475
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00102.1.g00560.1.am.mk length: 605 aa.
IPR005512 PRONE domain
method AccNumber shortName E-value location
Molecular Function GO:0005089 Rho guanyl-nucleotide exchange factor activity    
HMMPfam PF03759 PRONE 3.2e-151 145-187
209-536
ProfileScan PS51334 PRONE 107.682 138-548
no_ID  
HMMPanther PTHR32372 FAMILY 8.1e-260 41-536
HMMPanther PTHR32372:SF7 SUBFAMILY 8.1e-260 41-536
Seg seg seg NA 19-33
42-55
308-328
444-459
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00102.1 maker_non_over exon 377253 377316 . + . ID=Zjn_sc00102.1.g00560.1.am.mk:exon:1
Zjn_sc00102.1 maker_non_over exon 378217 378591 . + . ID=Zjn_sc00102.1.g00560.1.am.mk:exon:2
Zjn_sc00102.1 maker_non_over exon 378680 379035 . + . ID=Zjn_sc00102.1.g00560.1.am.mk:exon:3
Zjn_sc00102.1 maker_non_over exon 379179 379253 . + . ID=Zjn_sc00102.1.g00560.1.am.mk:exon:4
Zjn_sc00102.1 maker_non_over exon 379367 379675 . + . ID=Zjn_sc00102.1.g00560.1.am.mk:exon:5
Zjn_sc00102.1 maker_non_over exon 379823 380161 . + . ID=Zjn_sc00102.1.g00560.1.am.mk:exon:6
Zjn_sc00102.1 maker_non_over exon 380266 380355 . + . ID=Zjn_sc00102.1.g00560.1.am.mk:exon:7
Zjn_sc00102.1 maker_non_over exon 381928 382137 . + . ID=Zjn_sc00102.1.g00560.1.am.mk:exon:8

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