Z. japonica Nagirizaki
Zjn_sc00093.1.g01840.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G57230.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 110 1 62 8e-22 218.2 40 48.2
Subject 240 1 62
Annot | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=240
NR ref|XP_006656060.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 110 1 77 1e-22 222.7 54.5 66.4
Subject 245 1 107
Annot PREDICTED: MADS-box transcription factor 27-like [Oryza brachyantha]
IRGSP Os06t0347700-00_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 110 1 77 5e-26 133.6 55.5 64.5
Subject 147 1 107
Annot
Sbicolor Sobic.006G107700.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 110 1 77 2e-22 187.3 48.2 62.7
Subject 206 1 108
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00093.1.g01840.1.sm.mk length: 110 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 1.8e-24 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 8.8e-23 9-59
HMMSmart SM00432 no description 1.5e-33 1-60
ProfileScan PS50066 MADS_BOX_2 27.754 1-61
superfamily SSF55455 SRF-like 7.2e-24 1-84
no_ID  
HMMPanther PTHR11945 MADS 1.7e-32 1-61
HMMPanther PTHR11945:SF19 MADS 1.7e-32 1-61
Pseudomolecule
Chromosome Start End Strand
2032889533298595+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00093.1 maker_non_over exon 1156477 1156658 . + . ID=Zjn_sc00093.1.g01840.1.sm.mk:exon:1
Zjn_sc00093.1 maker_non_over exon 1164630 1164677 . + . ID=Zjn_sc00093.1.g01840.1.sm.mk:exon:2
Zjn_sc00093.1 maker_non_over exon 1166017 1166119 . + . ID=Zjn_sc00093.1.g01840.1.sm.mk:exon:3

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