Z. japonica Nagirizaki
Zjn_sc00093.1.g01810.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G57230.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 139 80 138 6e-18 171.9 28.8 36
Subject 239 1 60
Annot | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=239
NR dbj|BAD62035.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 139 80 138 5e-18 55.4 32.4 39.6
Subject 77 1 60
Annot MADS-box protein-like [Oryza sativa Japonica Group] gi|125555245|gb|EAZ00851.1| hypothetical protein OsI_22880 [Oryza sativa Indica Group] gi|125597145|gb|EAZ36925.1| hypothetical protein OsJ_21264 [Oryza sativa Japonica Group]
IRGSP Os06t0347700-00_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 139 80 138 2e-21 105.8 32.4 39.6
Subject 147 1 60
Annot
Sbicolor Sobic.007G135300.2.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 139 80 138 1e-17 65.5 27.3 38.1
Subject 91 1 60
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00093.1.g01810.1.am.mk length: 139 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 1.6e-14 82-102
116-137
HMMPfam PF00319 SRF-TF 8e-21 88-137
HMMSmart SM00432 no description 1.4e-29 80-138
ProfileScan PS50066 MADS_BOX_2 23.408 80-139
superfamily SSF55455 SRF-like 1e-18 79-138
no_ID  
HMMPanther PTHR11945 MADS 2.6e-29 68-138
HMMPanther PTHR11945:SF19 MADS 2.6e-29 68-138
Seg seg seg NA 34-65
Pseudomolecule
Chromosome Start End Strand
2032393653239784+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00093.1 maker_non_over exon 1106889 1107308 . + . ID=Zjn_sc00093.1.g01810.1.am.mk:exon:1

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