Z. japonica Nagirizaki
Zjn_sc00093.1.g01800.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G57230.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 87 1 65 4e-20 274.7 48.3 60.9
Subject 239 1 65
Annot | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=239
NR gb|KEH31691.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 87 1 81 2e-19 235.6 54 75.9
Subject 205 1 83
Annot MADS-box transcription factor [Medicago truncatula]
IRGSP Os06t0347700-00_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 87 1 65 2e-22 169 51.7 66.7
Subject 147 1 65
Annot
Sbicolor Sobic.004G250000.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 87 1 87 2e-20 211.5 51.7 75.9
Subject 184 1 88
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00093.1.g01800.1.sm.mk length: 87 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 2.2e-25 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 1.7e-24 9-59
HMMSmart SM00432 no description 1.1e-33 1-60
ProfileScan PS50066 MADS_BOX_2 27.824 1-61
superfamily SSF55455 SRF-like 5.4e-22 1-61
no_ID  
HMMPanther PTHR11945 MADS 2.9e-32 1-60
HMMPanther PTHR11945:SF19 MADS 2.9e-32 1-60
Pseudomolecule
Chromosome Start End Strand
2032290373233363+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00093.1 maker_non_over exon 1096561 1096742 . + . ID=Zjn_sc00093.1.g01800.1.sm.mk:exon:1
Zjn_sc00093.1 maker_non_over exon 1100806 1100887 . + . ID=Zjn_sc00093.1.g01800.1.sm.mk:exon:2

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