Z. japonica Nagirizaki
Zjn_sc00093.1.g01210.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G02380.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 386 18 381 2e-73 89.9 43.3 55.4
Subject 347 8 341
Annot | Symbols: COL2, ATCOL2 | CONSTANS-like 2 | chr3:487438-488624 REVERSE LENGTH=347
NR dbj|BAN00006.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 386 1 381 e-138 98.7 74.9 83.4
Subject 381 1 375
Annot heading date 1 [Setaria italica]
IRGSP Os06t0275000-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 386 1 381 4e-96 102.3 61.7 69.4
Subject 395 1 389
Annot
Sbicolor Sobic.010G115800.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 386 1 381 e-139 106.5 74.1 83.9
Subject 411 1 405
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00093.1.g01210.1.sm.mk length: 386 aa.
IPR000315 Zinc finger, B-box
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00643 zf-B_box 7.1e-05 68-111
HMMSmart SM00336 B-Box-type 2.6e-08 21-68
69-111
ProfileScan PS50119 ZF_BBOX 10.310 26-68
64-111
IPR010402 CCT domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF06203 CCT 7.5e-18 318-361
ProfileScan PS51017 CCT 16.311 318-360
no_ID  
Coil coil coiled-coil NA 121-142
HMMPanther PTHR31319 FAMILY 1.2e-125 1-381
Seg seg seg NA 109-140
146-172
200-221
264-273
324-339
Pseudomolecule
Chromosome Start End Strand
2028170752825706+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00093.1 maker_non_over exon 684599 685402 . + . ID=Zjn_sc00093.1.g01210.1.sm.mk:exon:1
Zjn_sc00093.1 maker_non_over exon 686125 686464 . + . ID=Zjn_sc00093.1.g01210.1.sm.mk:exon:2
Zjn_sc00093.1 maker_non_over exon 693214 693230 . + . ID=Zjn_sc00093.1.g01210.1.sm.mk:exon:3

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