Z. japonica Nagirizaki
Zjn_sc00092.1.g01310.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G37780.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 282 27 131 3e-35 108.2 22.7 28.7
Subject 305 10 117
Annot | Symbols: MYB87, ATMYB87 | myb domain protein 87 | chr4:17758404-17759526 REVERSE LENGTH=305
NR ref|XP_004986450.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 282 29 221 4e-56 84.4 45 51.4
Subject 238 1 169
Annot PREDICTED: transcription factor RAX1-like [Setaria italica]
IRGSP Os08t0248700-01_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 282 28 131 8e-36 112.1 23.4 29.1
Subject 316 11 117
Annot
Sbicolor Sobic.001G204400.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 282 28 211 6e-46 90.8 41.5 48.2
Subject 256 1 180
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00092.1.g01310.1.am.mk length: 282 aa.
IPR001005 SANT/Myb domain
method AccNumber shortName E-value location
Molecular Function GO:0003682 chromatin binding    
HMMSmart SM00717 SANT 7e-11 30-78
81-129
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 2.1e-20 32-83
84-130
superfamily SSF46689 Homeodomain-like 1.8e-22 31-128
IPR017877 Myb-like domain
ProfileScan PS50090 MYB_LIKE 10.185 29-76
IPR017930 Myb domain
ProfileScan PS51294 HTH_MYB 18.069 77-131
no_ID  
HMMPanther PTHR10641 MYB-LIKE 1.5e-46 29-132
HMMPfam PF13921 Myb_DNA-bind_6 4.9e-09 34-91
Seg seg seg NA 130-145
223-237
Pseudomolecule
Chromosome Start End Strand
738998893901651-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00092.1 maker_non_over exon 677195 677735 . - . ID=Zjn_sc00092.1.g01310.1.am.mk:exon:3
Zjn_sc00092.1 maker_non_over exon 677993 678114 . - . ID=Zjn_sc00092.1.g01310.1.am.mk:exon:2
Zjn_sc00092.1 maker_non_over exon 678772 678957 . - . ID=Zjn_sc00092.1.g01310.1.am.mk:exon:1

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