Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00091.1.g01300.1.sm.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00091.1)

BLAST

TAIR10	AT4G37940.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	133	1	112	3e-32	171.4	48.9	69.9
		Subject	228	1	116
		Annot	\| Symbols: AGL21 \| AGAMOUS-like 21 \| chr4:17835695-17838621 REVERSE LENGTH=228
NR	ref\|XP_004973502.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	133	1	112	3e-36	175.2	58.6	70.7
		Subject	233	1	116
		Annot	PREDICTED: MADS-box transcription factor 23-like [Setaria italica]
IRGSP	Os08t0431900-00_chr08_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	133	1	112	5e-37	119.5	55.6	69.2
		Subject	159	1	116
		Annot
Sbicolor	Sobic.007G135300.2.p\|Chr07\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	133	1	87	3e-37	68.4	54.9	60.2
		Subject	91	1	87
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR002100	Transcription factor, MADS-box
Zjn_sc00091.1.g01300.1.sm.mk				length: 133 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003677	DNA binding
Molecular Function	GO:0046983	protein dimerization activity
FPrintScan	PR00404	MADSDOMAIN	1.8e-29	3-23 23-38 38-59
HMMPfam	PF00319	SRF-TF	1.3e-26	9-59
HMMSmart	SM00432	no description	3.8e-40	1-60
PatternScan	PS00350	MADS_BOX_1	NA	3-57
ProfileScan	PS50066	MADS_BOX_2	32.240	1-61
superfamily	SSF55455	SRF-like	9.5e-32	2-94
no_ID
HMMPanther	PTHR11945	MADS	1.7e-49	1-133
HMMPanther	PTHR11945:SF19	MADS	1.7e-49	1-133

Pseudomolecule

Chromosome	Start	End	Strand
13	8665543	8676627	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00091.1	maker_non_over	exon	993174	993226	.	-	.	ID=Zjn_sc00091.1.g01300.1.sm.mk:exon:6
Zjn_sc00091.1	maker_non_over	exon	993422	993455	.	-	.	ID=Zjn_sc00091.1.g01300.1.sm.mk:exon:5
Zjn_sc00091.1	maker_non_over	exon	993737	993778	.	-	.	ID=Zjn_sc00091.1.g01300.1.sm.mk:exon:4
Zjn_sc00091.1	maker_non_over	exon	1000767	1000778	.	-	.	ID=Zjn_sc00091.1.g01300.1.sm.mk:exon:3
Zjn_sc00091.1	maker_non_over	exon	1001001	1001079	.	-	.	ID=Zjn_sc00091.1.g01300.1.sm.mk:exon:2
Zjn_sc00091.1	maker_non_over	exon	1004077	1004258	.	-	.	ID=Zjn_sc00091.1.g01300.1.sm.mk:exon:1