Z. japonica Nagirizaki
Zjn_sc00089.1.g01080.1.am.mk
Sequence
-
BLAST
| TAIR10 |
AT1G15950.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
365 |
13 |
357 |
1e-94 |
94.2 |
52.6 |
64.4 |
| Subject |
344 |
3 |
322 |
|
| Annot |
| Symbols: CCR1, IRX4, ATCCR1 | cinnamoyl coa reductase 1 | chr1:5478855-5481915 FORWARD LENGTH=344 |
| NR |
ref|XP_012702439.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
365 |
10 |
364 |
e-138 |
93.7 |
69 |
76.2 |
| Subject |
342 |
4 |
335 |
|
| Annot |
PREDICTED: cinnamoyl-CoA reductase 1-like [Setaria italica] |
| IRGSP |
Os08t0277200-01_chr08_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
365 |
7 |
363 |
e-127 |
93.7 |
66.6 |
73.4 |
| Subject |
342 |
8 |
339 |
|
| Annot |
|
| Sbicolor |
Sobic.002G146000.1.p|Chr02|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
365 |
17 |
358 |
e-114 |
94.8 |
57 |
67.7 |
| Subject |
346 |
15 |
331 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00089.1.g01080.1.am.mk |
length: 365 aa. |
| IPR001509 |
NAD-dependent epimerase/dehydratase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0044237 |
cellular metabolic process |
|
|
| Molecular Function |
GO:0050662 |
coenzyme binding |
|
|
| HMMPfam |
PF01370 |
Epimerase |
4.7e-15 |
129-283 |
| IPR008030 |
NmrA-like |
| HMMPfam |
PF05368 |
NmrA |
1.1e-05 |
23-89 |
| IPR016040 |
NAD(P)-binding domain |
| Gene3D |
G3DSA:3.40.50.720 |
no description |
2.5e-54 |
21-348 |
| no_ID |
|
| HMMPanther |
PTHR10366 |
NAD |
2.5e-130 |
16-365 |
| HMMPanther |
PTHR10366:SF9 |
CINNAMOYL-COA |
2.5e-130 |
16-365 |
| Seg |
seg |
seg |
NA |
261-273 |
| superfamily |
SSF51735 |
NAD(P)-binding |
9.8e-60 |
19-353 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 13 | 3760880 | 3762194 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00089.1 |
maker_non_over |
exon |
1019294 |
1019456 |
. |
+ |
. |
ID=Zjn_sc00089.1.g01080.1.am.mk:exon:1 |
| Zjn_sc00089.1 |
maker_non_over |
exon |
1019557 |
1019713 |
. |
+ |
. |
ID=Zjn_sc00089.1.g01080.1.am.mk:exon:2 |
| Zjn_sc00089.1 |
maker_non_over |
exon |
1019739 |
1019997 |
. |
+ |
. |
ID=Zjn_sc00089.1.g01080.1.am.mk:exon:3 |
| Zjn_sc00089.1 |
maker_non_over |
exon |
1020090 |
1020608 |
. |
+ |
. |
ID=Zjn_sc00089.1.g01080.1.am.mk:exon:4 |